myRT

myRT report for GCA_009934595.1_ASM993459v1

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Seq: NAXT01000056.1 Streptococcus agalactiae strain NNC003 contig92, whole genome shotgun sequence (20609 bp)
Overview 1 RT 1: 554-5963 bp 2 RT 2: 12162-20462 bp Neighborhood of RT #1 [554, 6001] RVT_N RVT-GII GIIM TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 Neighborhood of RT #2 [12162, 20500] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 554-2227 bp Feature: RT Description: RVT_N Location: 626-866 bp Feature: RT Description: RVT_N Location: 626-866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 4-1 574 bp Feature: domain Description: GIIM Note: maturase Location: 1643-1862 bp Feature: domain Description: GIIM Note: maturase Location: 1 643-1 862 bp Feature: gene Location: 2232-3200 bp Feature: domain Description: TraC-F-type Location: 2325-3021 bp Feature: domain Description: TraC-F-type Location: 2325-3021 bp Feature: gene Location: 3197-6001 bp Feature: domain Description: Peptidase_M23 Location: 4643-4847 bp Feature: domain Description: Peptidase_M23 Location: 4643-4847 bp Feature: domain Description: Phage_lysozyme2 Location: 5000-5510 bp Feature: domain Description: Phage_lysozyme2 Location: 5000-551 0 bp Feature: domain Description: PRK08581 Location: 5627-5963 bp Feature: domain Description: PRK08581 Location: 5627-5963 bp Feature: gene Location: 12162-12713 bp Feature: gene Location: 12763-18222 bp Feature: domain Description: N6_Mtase Location: 14767-15361 bp Feature: domain Description: N6_Mtase Location: 1 4767-1 5361 bp Feature: domain Description: COG4646 Location: 15952-18079 bp Feature: domain Description: COG4646 Location: 1 5952-1 8079 bp Feature: gene Location: 18722-20500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18983-19775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8983-1 9775 bp Feature: domain Description: Intron_maturas2 Location: 19880-20111 bp Feature: domain Description: Intron_maturas2 Location: 1 9880-201 1 1 bp Feature: domain Description: HNHc Note: nucleases Location: 20276-20462 bp Feature: domain Description: HNHc Note: nucleases Location: 20276-20462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348)
HNHc (smart00507)

Seq: NAXT01000058.1 Streptococcus agalactiae strain NNC003 contig94, whole genome shotgun sequence (21184 bp)
Overview 1 RT 1: 554-5959 bp 2 RT 2: 12735-21037 bp Neighborhood of RT #1 [554, 5997] RVT_N RVT-GII GIIM TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 Neighborhood of RT #2 [12735, 21075] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 554-2227 bp Feature: RT Description: RVT_N Location: 626-866 bp Feature: RT Description: RVT_N Location: 62 6-866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1574 bp Feature: domain Description: GIIM Note: maturase Location: 1643-1862 bp Feature: domain Description: GIIM Note: maturase Location: 1643-1862 bp Feature: gene Location: 2232-3194 bp Feature: domain Description: TraC-F-type Location: 2325-3021 bp Feature: domain Description: TraC-F-type Location: 2 32 5-302 1 bp Feature: gene Location: 3196-5997 bp Feature: domain Description: Peptidase_M23 Location: 4639-4849 bp Feature: domain Description: Peptidase_M2 3 Location: 4639-4849 bp Feature: domain Description: Phage_lysozyme2 Location: 4993-5506 bp Feature: domain Description: Phage_lysozyme2 Location: 4993-5506 bp Feature: domain Description: PRK08581 Location: 5623-5959 bp Feature: domain Description: PRK08581 Location: 562 3-5959 bp Feature: gene Location: 12735-13286 bp Feature: gene Location: 13335-18797 bp Feature: domain Description: N6_Mtase Location: 15348-15939 bp Feature: domain Description: N6_Mtase Location: 15348-15939 bp Feature: domain Description: COG4646 Location: 16530-18654 bp Feature: domain Description: COG4646 Location: 16530-18654 bp Feature: gene Location: 19297-21075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19558-20350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19558-2 0350 bp Feature: domain Description: Intron_maturas2 Location: 20455-20686 bp Feature: domain Description: Intron_maturas2 Location: 2 0455-2 0686 bp Feature: domain Description: HNHc Note: nucleases Location: 20851-21037 bp Feature: domain Description: HNHc Note: nucleases Location: 2 0851-2 1037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348)
HNHc (smart00507)

Seq: NAXT01000055.1 Streptococcus agalactiae strain NNC003 contig91, whole genome shotgun sequence (13200 bp)
Overview 1 RT 1: 1-2726 bp Neighborhood of RT #1 [1, 2746] RVT_N RVT-GII GIIM CelC CelA Feature: gene Location: 1-83 bp Feature: gene Location: 88-1761 bp Feature: RT Description: RVT_N Location: 160-400 bp Feature: RT Description: RVT_N Location: 160-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1177-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1177-13 96 bp Feature: gene Location: 2296-2409 bp Feature: domain Description: CelC Location: 2308-2398 bp Feature: domain Description: CelC Location: 23 08-23 98 bp Feature: gene Location: 2426-2746 bp Feature: domain Description: CelA Location: 2429-2726 bp Feature: domain Description: CelA Location: 2429-2726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CelC (COG1447), CelA (TIGR03030), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NAXT01000016.1 Streptococcus agalactiae strain NNC003 contig52, whole genome shotgun sequence (25229 bp)
Overview 1 RT 1: 21084-24674 bp Neighborhood of RT #1 [21084, 24712] KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 21084-21383 bp Feature: gene Location: 21453-22796 bp Feature: domain Description: KOG1000 Location: 21732-22050 bp Feature: domain Description: KOG1000 Location: 21732-22050 bp Feature: gene Location: 22934-24712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23195-23987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23195-23987 bp Feature: domain Description: Intron_maturas2 Location: 24092-24323 bp Feature: domain Description: Intron_maturas2 Location: 24 092-24 323 bp Feature: domain Description: HNHc Note: nucleases Location: 24488-24674 bp Feature: domain Description: HNHc Note: nucleases Location: 24 4 88-24 674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAXT01000072.1 Streptococcus agalactiae strain NNC003 contig108, whole genome shotgun sequence (14571 bp)
Overview 1 RT 1: 518-3248 bp Neighborhood of RT #1 [518, 3256] RVT-GII Intron_maturas2 HNHc SF2_C_SNF TnpV Feature: gene Location: 518-2296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 779-1571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 779-15 71 bp Feature: domain Description: Intron_maturas2 Location: 1676-1907 bp Feature: domain Description: Intron_maturas2 Location: 1676-1907 bp Feature: domain Description: HNHc Note: nucleases Location: 2072-2258 bp Feature: domain Description: HNHc Note: nucleases Location: 2072-225 8 bp Feature: gene Location: 2290-2901 bp Feature: domain Description: SF2_C_SNF Location: 2677-2824 bp Feature: domain Description: SF2_C_SNF Location: 2677-2824 bp Feature: gene Location: 2882-3256 bp Feature: domain Description: TnpV Location: 2918-3248 bp Feature: domain Description: TnpV Location: 2918-3248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SF2_C_SNF (cd18793), TnpV (pfam14198), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAXT01000054.1 Streptococcus agalactiae strain NNC003 contig90, whole genome shotgun sequence (20654 bp)
Overview 1 RT 1: 1-4026 bp Neighborhood of RT #1 [1, 4094] RVT_N RVT-GII GIIM TraC-F-type PrgI Feature: gene Location: 1-83 bp Feature: gene Location: 88-1761 bp Feature: RT Description: RVT_N Location: 160-400 bp Feature: RT Description: RVT_N Location: 16 0-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1177-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1177-1396 bp Feature: gene Location: 2291-3763 bp Feature: domain Description: TraC-F-type Location: 2618-3449 bp Feature: domain Description: TraC-F-type Location: 26 18-3449 bp Feature: gene Location: 3741-4094 bp Feature: domain Description: PrgI Location: 3753-4026 bp Feature: domain Description: PrgI Location: 3753-4026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), PrgI (pfam12666), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NAXT01000057.1 Streptococcus agalactiae strain NNC003 contig93, whole genome shotgun sequence (70490 bp)
Overview 1 RT 1: 554-2542 bp Neighborhood of RT #1 [554, 2541] RVT_N RVT-GII GIIM CelC Feature: gene Location: 554-2227 bp Feature: RT Description: RVT_N Location: 626-866 bp Feature: RT Description: RVT_N Location: 626-866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-157 4 bp Feature: domain Description: GIIM Note: maturase Location: 1643-1862 bp Feature: domain Description: GIIM Note: maturase Location: 1643-1862 bp Feature: gene Location: 2232-2312 bp Feature: gene Location: 2314-2541 bp Feature: domain Description: CelC Location: 2332-2542 bp Feature: domain Description: CelC Location: 2332-2542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CelC (COG1447), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NAXT01000077.1 Streptococcus agalactiae strain NNC003 contig113, whole genome shotgun sequence (54967 bp)
Overview 1 RT 1: 50880-54967 bp Neighborhood of RT #1 [50880, 54967] PrgI TraC-F-type RVT_N RVT-GII GIIM Feature: gene Location: 50880-51233 bp Feature: domain Description: PrgI Location: 50892-51150 bp Feature: domain Description: PrgI Location: 508 92-51150 bp Feature: gene Location: 51211-52677 bp Feature: domain Description: TraC-F-type Location: 51964-52372 bp Feature: domain Description: TraC-F-type Location: 51964-52372 bp Feature: gene Location: 53207-54880 bp Feature: RT Description: RVT_N Location: 53279-53519 bp Feature: RT Description: RVT_N Location: 53279-53519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53567-54227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53567-54227 bp Feature: domain Description: GIIM Note: maturase Location: 54296-54515 bp Feature: domain Description: GIIM Note: maturase Location: 54296-54515 bp Feature: gene Location: 54885-54967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)