myRT

myRT report for GCA_009934635.1_ASM993463v1

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Seq: NAXW01000028.1 Streptococcus agalactiae strain NNC001 190, whole genome shotgun sequence (10555 bp)
Overview 1 RT 1: 67-7012 bp Neighborhood of RT #1 [67, 7364] RVT-GII Peptidases_S8_C5a_Peptidase fn3_5 CHU_C UPF0236 Feature: gene Location: 67-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 -886 bp Feature: gene Location: 1925-5377 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 2270-3668 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 2270-3668 bp Feature: domain Description: fn3_5 Location: 3716-4046 bp Feature: domain Description: fn3_5 Location: 371 6-4046 bp Feature: domain Description: CHU_C Location: 4382-4676 bp Feature: domain Description: CHU_C Location: 4382-4676 bp Feature: gene Location: 6031-7364 bp Feature: domain Description: UPF0236 Location: 6061-7012 bp Feature: domain Description: UPF0236 Location: 6061 -701 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), CHU_C (pfam13585), UPF0236 (pfam06782), RVT-GII

Seq: NAXW01000029.1 Streptococcus agalactiae strain NNC001 191, whole genome shotgun sequence (337337 bp)
Overview 1 RT 1: 520-3985 bp Neighborhood of RT #1 [520, 3990] RVT-GII COG3442 MurE Feature: gene Location: 520-1796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 4-1339 bp Feature: gene Location: 1862-2647 bp Feature: domain Description: COG3442 Location: 1910-2636 bp Feature: domain Description: COG3442 Location: 1910-2 636 bp Feature: gene Location: 2647-3990 bp Feature: domain Description: MurE Location: 2680-3985 bp Feature: domain Description: MurE Location: 2 680-3985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), RVT-GII

Seq: NAXW01000027.1 Streptococcus agalactiae strain NNC001 189, whole genome shotgun sequence (118741 bp)
Overview 1 RT 1: 67-4314 bp Neighborhood of RT #1 [67, 4328] RVT-GII PRK10416 Cof Feature: gene Location: 67-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: gene Location: 1894-3504 bp Feature: domain Description: PRK10416 Location: 2179-3493 bp Feature: domain Description: PRK10416 Location: 2179-3 493 bp Feature: gene Location: 3504-4328 bp Feature: domain Description: Cof Location: 3516-4314 bp Feature: domain Description: Cof Location: 3 516-43 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10416 (signal recognition particle-docking protein FtsY; Provisional), Cof (COG0561), RVT-GII

Seq: NAXW01000008.1 Streptococcus agalactiae strain NNC001 169, whole genome shotgun sequence (8451 bp)
Overview 1 RT 1: 3010-7475 bp Neighborhood of RT #1 [3010, 7932] strep_his_triad strep_his_triad strep_his_triad AdcA RVT-GII Feature: gene Location: 3010-5478 bp Feature: domain Description: strep_his_triad Location: 3016-4129 bp Feature: domain Description: strep_his_triad Location: 3016-4 129 bp Feature: domain Description: strep_his_triad Location: 4267-4801 bp Feature: domain Description: strep_his_triad Location: 4 267-4 801 bp Feature: domain Description: strep_his_triad Location: 4966-5410 bp Feature: domain Description: strep_his_triad Location: 4 966-54 10 bp Feature: gene Location: 5491-6411 bp Feature: domain Description: AdcA Location: 5584-6409 bp Feature: domain Description: AdcA Location: 5584 -64 09 bp Feature: gene Location: 6656-7932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6860-7475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6860-74 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT strep_his_triad (TIGR01363), AdcA (cd01017), RVT-GII

Seq: NAXW01000030.1 Streptococcus agalactiae strain NNC001 192, whole genome shotgun sequence (169658 bp)
Overview 1 RT 1: 520-3574 bp 2 RT 2: 166746-169135 bp Neighborhood of RT #1 [520, 3576] RVT-GII YcgQ YraQ Neighborhood of RT #2 [166746, 169592] lipoyltrans RVT-GII Feature: gene Location: 520-1796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1339 bp Feature: gene Location: 1862-2674 bp Feature: domain Description: YcgQ Location: 1865-2672 bp Feature: domain Description: YcgQ Location: 1865 -2672 bp Feature: gene Location: 2674-3576 bp Feature: domain Description: YraQ Location: 2677-3574 bp Feature: domain Description: YraQ Location: 2677-35 74 bp Feature: gene Location: 166746-167735 bp Feature: domain Description: lipoyltrans Location: 166761-167709 bp Feature: domain Description: lipoyltrans Location: 166761-167709 bp Feature: gene Location: 167766-167951 bp Feature: gene Location: 168316-169592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168520-169135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1685 20-169135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcgQ (COG3689), YraQ (COG0701), RVT-GII, lipoyltrans (TIGR00545)

Seq: NAXW01000018.1 Streptococcus agalactiae strain NNC001 179, whole genome shotgun sequence (89792 bp)
Overview 1 RT 1: 68651-78820 bp Neighborhood of RT #1 [68651, 78820] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 68651-69202 bp Feature: gene Location: 69252-74693 bp Feature: domain Description: N6_Mtase Location: 71244-71835 bp Feature: domain Description: N6 _Mtase Location: 71244-71835 bp Feature: domain Description: COG4646 Location: 72429-74550 bp Feature: domain Description: COG46 46 Location: 72429-74550 bp Feature: gene Location: 75191-76969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75452-76244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75452-76 244 bp Feature: domain Description: Intron_maturas2 Location: 76349-76580 bp Feature: domain Description: Intron_maturas2 Location: 76 349-76 580 bp Feature: domain Description: HNHc Note: nucleases Location: 76745-76931 bp Feature: domain Description: HNHc Note: nucleases Location: 76 745-76 931 bp Feature: gene Location: 77107-78450 bp Feature: domain Description: KOG1000 Location: 77386-77701 bp Feature: domain Description: KOG1000 Location: 77386 -77701 bp Feature: gene Location: 78521-78820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )