myRT

myRT report for GCA_009934695.1_ASM993469v1

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Seq: NAYG01000035.1 Streptococcus agalactiae strain NNA012 contig58, whole genome shotgun sequence (2555 bp)
Overview 1 RT 1: 110-2475 bp Neighborhood of RT #1 [110, 2475] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 110-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 -1 1 63 bp Feature: domain Description: Intron_maturas2 Location: 1268-1499 bp Feature: domain Description: Intron_maturas2 Location: 1 268-1 499 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: domain Description: HNHc Note: nucleases Location: 1 664-1 850 bp Feature: gene Location: 2287-2475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAYG01000036.1 Streptococcus agalactiae strain NNA012 contig59, whole genome shotgun sequence (45695 bp)
Overview 1 RT 1: 110-8428 bp 2 RT 2: 40690-45148 bp Neighborhood of RT #1 [110, 8428] RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Neighborhood of RT #2 [40690, 45186] ssb KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 110-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1163 bp Feature: domain Description: Intron_maturas2 Location: 1268-1499 bp Feature: domain Description: Intron_maturas2 Location: 12 68-1499 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: gene Location: 2386-7827 bp Feature: domain Description: N6_Mtase Location: 4378-4969 bp Feature: domain Description: N6_Mtase Location: 4378-4969 bp Feature: domain Description: COG4646 Location: 5560-7684 bp Feature: domain Description: COG4646 Location: 5560-7684 bp Feature: gene Location: 7877-8428 bp Feature: gene Location: 40690-41349 bp Feature: domain Description: ssb Location: 40936-41329 bp Feature: domain Description: ssb Location: 40936-4132 9 bp Feature: gene Location: 41390-43321 bp Feature: domain Description: KOG1000 Location: 41810-42044 bp Feature: domain Description: KOG1000 Location: 41810-42 044 bp Feature: gene Location: 43408-45186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43669-44461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43669-44461 bp Feature: domain Description: Intron_maturas2 Location: 44566-44797 bp Feature: domain Description: Intron_maturas2 Location: 44566-44797 bp Feature: domain Description: HNHc Note: nucleases Location: 44962-45148 bp Feature: domain Description: HNHc Note: nucleases Location: 44962 -45148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), ssb (TIGR00621), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: NAYG01000041.1 Streptococcus agalactiae strain NNA012 contig64, whole genome shotgun sequence (263388 bp)
Overview 1 RT 1: 520-3986 bp Neighborhood of RT #1 [520, 3991] RVT-GII GIIM COG3442 MurE Feature: gene Location: 520-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-13 3 9 bp Feature: domain Description: GIIM Note: maturase Location: 1393-1609 bp Feature: domain Description: GIIM Note: maturase Location: 13 93 -1609 bp Feature: gene Location: 1863-2648 bp Feature: domain Description: COG3442 Location: 1911-2637 bp Feature: domain Description: COG3 442 Location: 1911-263 7 bp Feature: gene Location: 2648-3991 bp Feature: domain Description: MurE Location: 2681-3986 bp Feature: domain Description: MurE Location: 2681-3 986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), RVT-GII, GIIM (pfam08388)

Seq: NAYG01000011.1 Streptococcus agalactiae strain NNA012 contig34, whole genome shotgun sequence (8441 bp)
Overview 1 RT 1: 3010-7734 bp Neighborhood of RT #1 [3010, 7922] strep_his_triad strep_his_triad strep_his_triad AdcA RVT-GII GIIM Feature: gene Location: 3010-5478 bp Feature: domain Description: strep_his_triad Location: 3016-4129 bp Feature: domain Description: strep_his_triad Location: 3016-4 129 bp Feature: domain Description: strep_his_triad Location: 4267-4801 bp Feature: domain Description: strep_his_triad Location: 4 267-4 801 bp Feature: domain Description: strep_his_triad Location: 4966-5410 bp Feature: domain Description: strep_his_triad Location: 4 966-54 10 bp Feature: gene Location: 5491-6411 bp Feature: domain Description: AdcA Location: 5584-6409 bp Feature: domain Description: AdcA Location: 5584 -64 09 bp Feature: gene Location: 6645-7922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6849-7464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684 9-74 64 bp Feature: domain Description: GIIM Note: maturase Location: 7518-7734 bp Feature: domain Description: GIIM Note: maturase Location: 7518-7734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT strep_his_triad (TIGR01363), AdcA (cd01017), RVT-GII, GIIM (pfam08388)

Seq: NAYG01000039.1 Streptococcus agalactiae strain NNA012 contig62, whole genome shotgun sequence (169678 bp)
Overview 1 RT 1: 67-4749 bp 2 RT 2: 166102-168971 bp Neighborhood of RT #1 [67, 4769] RVT-GII GIIM lipoyltrans PRK11856 lipoamide_DH Neighborhood of RT #2 [166102, 169159] YraQ YcgQ RVT-GII GIIM Feature: gene Location: 67-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: domain Description: GIIM Note: maturase Location: 940-1156 bp Feature: domain Description: GIIM Note: maturase Location: 940-115 6 bp Feature: gene Location: 1925-2914 bp Feature: domain Description: lipoyltrans Location: 1940-2888 bp Feature: domain Description: lipoyltrans Location: 1940-2888 bp Feature: gene Location: 3012-4769 bp Feature: domain Description: PRK11856 Location: 3015-3363 bp Feature: domain Description: PRK1185 6 Location: 3015 -3363 bp Feature: domain Description: lipoamide_DH Location: 3390-4749 bp Feature: domain Description: lipoamide_DH Location: 3390-4749 bp Feature: gene Location: 166102-167004 bp Feature: domain Description: YraQ Location: 166105-167002 bp Feature: domain Description: YraQ Location: 166105 -167002 bp Feature: gene Location: 167004-167816 bp Feature: domain Description: YcgQ Location: 167007-167814 bp Feature: domain Description: YcgQ Location: 167007-167814 bp Feature: gene Location: 167882-169159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168086-168701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168086-168701 bp Feature: domain Description: GIIM Note: maturase Location: 168755-168971 bp Feature: domain Description: GIIM Note: maturase Location: 16875 5 -168971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lipoyltrans (TIGR00545), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), RVT-GII, GIIM (pfam08388), YraQ (COG0701), YcgQ (COG3689)

Seq: NAYG01000034.1 Streptococcus agalactiae strain NNA012 contig57, whole genome shotgun sequence (184983 bp)
Overview 1 RT 1: 510-4139 bp 2 RT 2: 180655-184729 bp Neighborhood of RT #1 [510, 4139] RVT-GII Intron_maturas2 HNHc KOG1000 Neighborhood of RT #2 [180655, 184917] Cof PRK10416 RVT-GII GIIM Feature: gene Location: 510-2288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-156 3 bp Feature: domain Description: Intron_maturas2 Location: 1668-1899 bp Feature: domain Description: Intron_maturas2 Location: 16 6 8-1899 bp Feature: domain Description: HNHc Note: nucleases Location: 2064-2250 bp Feature: domain Description: HNHc Note: nucleases Location: 206 4-2250 bp Feature: gene Location: 2426-3769 bp Feature: domain Description: KOG1000 Location: 2705-3020 bp Feature: domain Description: KOG1000 Location: 2705-3020 bp Feature: gene Location: 3840-4139 bp Feature: gene Location: 180655-181479 bp Feature: domain Description: Cof Location: 180667-181465 bp Feature: domain Description: Cof Location: 1806 6 7-18146 5 bp Feature: gene Location: 181479-183089 bp Feature: domain Description: PRK10416 Location: 181764-183078 bp Feature: domain Description: PRK10416 Location: 18176 4-183078 bp Feature: gene Location: 183640-184917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183844-184459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183844-184459 bp Feature: domain Description: GIIM Note: maturase Location: 184513-184729 bp Feature: domain Description: GIIM Note: maturase Location: 184513-184729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), GIIM (pfam08388)

Seq: NAYG01000040.1 Streptococcus agalactiae strain NNA012 contig63, whole genome shotgun sequence (10556 bp)
Overview 1 RT 1: 67-7190 bp Neighborhood of RT #1 [67, 7366] RVT-GII GIIM Peptidases_S8_C5a_Peptidase fn3_5 CHU_C UPF0236 Feature: gene Location: 67-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 1-886 bp Feature: domain Description: GIIM Note: maturase Location: 940-1156 bp Feature: domain Description: GIIM Note: maturase Location: 940-1156 bp Feature: gene Location: 1926-5378 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 2271-3669 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 227 1-3669 bp Feature: domain Description: fn3_5 Location: 3717-4047 bp Feature: domain Description: fn3_5 Location: 37 17 -4047 bp Feature: domain Description: CHU_C Location: 4383-4677 bp Feature: domain Description: CHU_C Location: 4383-467 7 bp Feature: gene Location: 6032-7366 bp Feature: domain Description: UPF0236 Location: 6062-7190 bp Feature: domain Description: UPF0236 Location: 6062-7 190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), CHU_C (pfam13585), UPF0236 (pfam06782), RVT-GII, GIIM (pfam08388)

Seq: NAYG01000015.1 Streptococcus agalactiae strain NNA012 contig38, whole genome shotgun sequence (38445 bp)
Overview 1 RT 1: 34308-37898 bp Neighborhood of RT #1 [34308, 37936] KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 34308-34607 bp Feature: gene Location: 34677-36020 bp Feature: domain Description: KOG1000 Location: 34956-35274 bp Feature: domain Description: KOG1000 Location: 34956-35274 bp Feature: gene Location: 36158-37936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36419-37211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36419-37211 bp Feature: domain Description: Intron_maturas2 Location: 37316-37547 bp Feature: domain Description: Intron_maturas2 Location: 37316-37547 bp Feature: domain Description: HNHc Note: nucleases Location: 37712-37898 bp Feature: domain Description: HNHc Note: nucleases Location: 37712-378 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)