myRT

myRT report for GCA_009934735.1_ASM993473v1

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Seq: NAYC01000040.1 Streptococcus agalactiae strain NNA016 contig53, whole genome shotgun sequence (169678 bp)
Overview 1 RT 1: 67-2888 bp 2 RT 2: 166102-168971 bp Neighborhood of RT #1 [67, 2914] RVT-GII GIIM lipoyltrans Neighborhood of RT #2 [166102, 169159] YraQ YcgQ RVT-GII GIIM Feature: gene Location: 67-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 -886 bp Feature: domain Description: GIIM Note: maturase Location: 940-1156 bp Feature: domain Description: GIIM Note: maturase Location: 940-1 1 56 bp Feature: gene Location: 1709-1894 bp Feature: gene Location: 1925-2914 bp Feature: domain Description: lipoyltrans Location: 1940-2888 bp Feature: domain Description: lipoyltrans Location: 1 940-2888 bp Feature: gene Location: 166102-167004 bp Feature: domain Description: YraQ Location: 166105-167002 bp Feature: domain Description: YraQ Location: 1 661 05-1 67002 bp Feature: gene Location: 167004-167816 bp Feature: domain Description: YcgQ Location: 167007-167814 bp Feature: domain Description: YcgQ Location: 1 67007-1 6781 4 bp Feature: gene Location: 167882-169159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168086-168701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 68086-1 68701 bp Feature: domain Description: GIIM Note: maturase Location: 168755-168971 bp Feature: domain Description: GIIM Note: maturase Location: 1 68755-1 68971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lipoyltrans (TIGR00545), RVT-GII, GIIM (pfam08388), YraQ (COG0701), YcgQ (COG3689)

Seq: NAYC01000041.1 Streptococcus agalactiae strain NNA016 contig54, whole genome shotgun sequence (263388 bp)
Overview 1 RT 1: 520-3986 bp Neighborhood of RT #1 [520, 3991] RVT-GII GIIM COG3442 MurE Feature: gene Location: 520-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 4-1339 bp Feature: domain Description: GIIM Note: maturase Location: 1393-1609 bp Feature: domain Description: GIIM Note: maturase Location: 1393-1609 bp Feature: gene Location: 1863-2648 bp Feature: domain Description: COG3442 Location: 1911-2637 bp Feature: domain Description: COG3442 Location: 1911-2 637 bp Feature: gene Location: 2648-3991 bp Feature: domain Description: MurE Location: 2681-3986 bp Feature: domain Description: MurE Location: 2 681-3986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), RVT-GII, GIIM (pfam08388)

Seq: NAYC01000035.1 Streptococcus agalactiae strain NNA016 contig48, whole genome shotgun sequence (45695 bp)
Overview 1 RT 1: 110-8428 bp 2 RT 2: 40690-45148 bp Neighborhood of RT #1 [110, 8428] RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Neighborhood of RT #2 [40690, 45186] ssb KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 110-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 71-1163 bp Feature: domain Description: Intron_maturas2 Location: 1268-1499 bp Feature: domain Description: Intron_maturas2 Location: 1268-1499 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: gene Location: 2386-7827 bp Feature: domain Description: N6_Mtase Location: 4378-4969 bp Feature: domain Description: N6_Mtase Location: 43 78-4969 bp Feature: domain Description: COG4646 Location: 5560-7684 bp Feature: domain Description: COG4646 Location: 5560-7684 bp Feature: gene Location: 7877-8428 bp Feature: gene Location: 40690-41349 bp Feature: domain Description: ssb Location: 40936-41329 bp Feature: domain Description: ssb Location: 4093 6-413 29 bp Feature: gene Location: 41390-43321 bp Feature: domain Description: KOG1000 Location: 41810-42044 bp Feature: domain Description: KOG1000 Location: 41810-42044 bp Feature: gene Location: 43408-45186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43669-44461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 669-44461 bp Feature: domain Description: Intron_maturas2 Location: 44566-44797 bp Feature: domain Description: Intron_maturas2 Location: 44566-44797 bp Feature: domain Description: HNHc Note: nucleases Location: 44962-45148 bp Feature: domain Description: HNHc Note: nucleases Location: 44962-45148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), ssb (TIGR00621), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: NAYC01000036.1 Streptococcus agalactiae strain NNA016 contig49, whole genome shotgun sequence (38767 bp)
Overview 1 RT 1: 510-4138 bp Neighborhood of RT #1 [510, 4138] RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 510-2288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1563 bp Feature: domain Description: Intron_maturas2 Location: 1668-1899 bp Feature: domain Description: Intron_maturas2 Location: 1668-1899 bp Feature: domain Description: HNHc Note: nucleases Location: 2064-2250 bp Feature: domain Description: HNHc Note: nucleases Location: 2064 -2250 bp Feature: gene Location: 2426-3769 bp Feature: domain Description: KOG1000 Location: 2705-3023 bp Feature: domain Description: KOG1000 Location: 2705-3023 bp Feature: gene Location: 3839-4138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAYC01000011.1 Streptococcus agalactiae strain NNA016 contig24, whole genome shotgun sequence (10556 bp)
Overview 1 RT 1: 3191-10302 bp Neighborhood of RT #1 [3191, 10490] UPF0236 Peptidases_S8_C5a_Peptidase fn3_5 CHU_C RVT-GII GIIM Feature: gene Location: 3191-4525 bp Feature: domain Description: UPF0236 Location: 3221-4349 bp Feature: domain Description: UPF0236 Location: 3221-4349 bp Feature: gene Location: 5179-8631 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 5524-6922 bp Feature: domain Description: Peptidases_S8_C5 a_Peptidase Location: 5 5 24-6922 bp Feature: domain Description: fn3_5 Location: 6970-7300 bp Feature: domain Description: fn3_5 Location: 6970-7300 bp Feature: domain Description: CHU_C Location: 7636-7930 bp Feature: domain Description: CHU_C Location: 7636-7930 bp Feature: gene Location: 9213-10490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9417-10032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9417-10032 bp Feature: domain Description: GIIM Note: maturase Location: 10086-10302 bp Feature: domain Description: GIIM Note: maturase Location: 10086-10302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0236 (pfam06782), Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), CHU_C (pfam13585), RVT-GII, GIIM (pfam08388)

Seq: NAYC01000010.1 Streptococcus agalactiae strain NNA016 contig23, whole genome shotgun sequence (8441 bp)
Overview 1 RT 1: 3010-7734 bp Neighborhood of RT #1 [3010, 7922] strep_his_triad strep_his_triad strep_his_triad AdcA RVT-GII GIIM Feature: gene Location: 3010-5478 bp Feature: domain Description: strep_his_triad Location: 3016-4129 bp Feature: domain Description: strep_his_triad Location: 3016 -4129 bp Feature: domain Description: strep_his_triad Location: 4267-4801 bp Feature: domain Description: strep_his_triad Location: 426 7-4801 bp Feature: domain Description: strep_his_triad Location: 4966-5410 bp Feature: domain Description: strep_his_triad Location: 496 6 -5410 bp Feature: gene Location: 5491-6411 bp Feature: domain Description: AdcA Location: 5584-6409 bp Feature: domain Description: AdcA Location: 5584-6 409 bp Feature: gene Location: 6645-7922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6849-7464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 849-746 4 bp Feature: domain Description: GIIM Note: maturase Location: 7518-7734 bp Feature: domain Description: GIIM Note: maturase Location: 7518-7734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT strep_his_triad (TIGR01363), AdcA (cd01017), RVT-GII, GIIM (pfam08388)

Seq: NAYC01000034.1 Streptococcus agalactiae strain NNA016 contig47, whole genome shotgun sequence (2555 bp)
Overview 1 RT 1: 110-2475 bp Neighborhood of RT #1 [110, 2475] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 110-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 1-1163 bp Feature: domain Description: Intron_maturas2 Location: 1268-1499 bp Feature: domain Description: Intron_maturas2 Location: 1268-1499 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: gene Location: 2287-2475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAYC01000037.1 Streptococcus agalactiae strain NNA016 contig50, whole genome shotgun sequence (184983 bp)
Overview 1 RT 1: 510-4139 bp 2 RT 2: 180655-184729 bp Neighborhood of RT #1 [510, 4139] RVT-GII Intron_maturas2 HNHc KOG1000 Neighborhood of RT #2 [180655, 184917] Cof PRK10416 RVT-GII GIIM Feature: gene Location: 510-2288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1563 bp Feature: domain Description: Intron_maturas2 Location: 1668-1899 bp Feature: domain Description: Intron_maturas2 Location: 1668 -18 99 bp Feature: domain Description: HNHc Note: nucleases Location: 2064-2250 bp Feature: domain Description: HNHc Note: nucleases Location: 2064-2250 bp Feature: gene Location: 2426-3769 bp Feature: domain Description: KOG1000 Location: 2705-3020 bp Feature: domain Description: KOG1000 Location: 2705-3020 bp Feature: gene Location: 3840-4139 bp Feature: gene Location: 180655-181479 bp Feature: domain Description: Cof Location: 180667-181465 bp Feature: domain Description: Cof Location: 18 0667-18 1465 bp Feature: gene Location: 181479-183089 bp Feature: domain Description: PRK10416 Location: 181764-183078 bp Feature: domain Description: PRK10416 Location: 18 1764-18 3078 bp Feature: gene Location: 183640-184917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183844-184459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18 38 44-18 4459 bp Feature: domain Description: GIIM Note: maturase Location: 184513-184729 bp Feature: domain Description: GIIM Note: maturase Location: 18 4513-18 4729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), GIIM (pfam08388)