myRT

myRT report for GCA_009934935.1_ASM993493v1

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Seq: NAYF01000033.1 Streptococcus agalactiae strain NNA013 contig48, whole genome shotgun sequence (92548 bp)
Overview 1 RT 1: 87031-91631 bp Neighborhood of RT #1 [87031, 91996] TraC-F-type RVT_N RVT-GII GIIM Feature: gene Location: 87031-89325 bp Feature: gene Location: 89332-90318 bp Feature: domain Description: TraC-F-type Location: 89416-90133 bp Feature: domain Description: TraC-F-type Location: 8941 6-901 33 bp Feature: gene Location: 90323-91996 bp Feature: RT Description: RVT_N Location: 90395-90635 bp Feature: RT Description: RVT_N Location: 90395-90635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90683-91343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90683-91 343 bp Feature: domain Description: GIIM Note: maturase Location: 91412-91631 bp Feature: domain Description: GIIM Note: maturase Location: 91 41 2-91 631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NAYF01000056.1 Streptococcus agalactiae strain NNA013 contig71, whole genome shotgun sequence (8179 bp)
Overview 1 RT 1: 1048-6915 bp Neighborhood of RT #1 [1048, 6938] Omega_Repress PRK07726 RVT-GII HNHc PRK07726 PinE Feature: gene Location: 1048-1287 bp Feature: domain Description: Omega_Repress Location: 1054-1261 bp Feature: domain Description: Omega_Repress Location: 1054-12 61 bp Feature: gene Location: 1407-3083 bp Feature: domain Description: PRK07726 Location: 1413-2931 bp Feature: domain Description: PRK0772 6 Location: 1413-2 931 bp Feature: gene Location: 3336-5222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3651-4389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3651-4389 bp Feature: domain Description: HNHc Note: nucleases Location: 4941-5106 bp Feature: domain Description: HNHc Note: nucleases Location: 4941-5106 bp Feature: gene Location: 5959-6321 bp Feature: domain Description: PRK07726 Location: 5968-6301 bp Feature: domain Description: PRK0772 6 Location: 5968-6301 bp Feature: gene Location: 6321-6938 bp Feature: domain Description: PinE Location: 6324-6915 bp Feature: domain Description: PinE Location: 632 4-6915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Omega_Repress (pfam07764), PRK07726 (DNA topoisomerase 3), RVT-GII, HNHc (smart00507), PinE (COG1961)

Seq: NAYF01000046.1 Streptococcus agalactiae strain NNA013 contig61, whole genome shotgun sequence (19628 bp)
Overview 1 RT 1: 1-4025 bp Neighborhood of RT #1 [1, 4093] RVT_N RVT-GII GIIM TraC-F-type PrgI Feature: gene Location: 1-83 bp Feature: gene Location: 88-1761 bp Feature: RT Description: RVT_N Location: 160-400 bp Feature: RT Description: RVT_N Location: 160-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1177-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1177-13 96 bp Feature: gene Location: 2290-3762 bp Feature: domain Description: TraC-F-type Location: 2614-3448 bp Feature: domain Description: TraC-F-type Location: 2614-3 448 bp Feature: gene Location: 3740-4093 bp Feature: domain Description: PrgI Location: 3752-4025 bp Feature: domain Description: PrgI Location: 3 752-4025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), PrgI (pfam12666), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NAYF01000045.1 Streptococcus agalactiae strain NNA013 contig60, whole genome shotgun sequence (9220 bp)
Overview 1 RT 1: 1-4016 bp Neighborhood of RT #1 [1, 4105] RVT_N RVT-GII GIIM VirB4_CagE PrgI Feature: gene Location: 1-83 bp Feature: gene Location: 88-1761 bp Feature: RT Description: RVT_N Location: 160-400 bp Feature: RT Description: RVT_N Location: 160-4 00 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 8-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1177-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1177-1396 bp Feature: gene Location: 2290-3765 bp Feature: domain Description: VirB4_CagE Location: 2671-3736 bp Feature: domain Description: VirB4 _CagE Location: 2671-3736 bp Feature: gene Location: 3746-4105 bp Feature: domain Description: PrgI Location: 3779-4016 bp Feature: domain Description: PrgI Location: 3779-4 016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4_CagE (TIGR00929), PrgI (pfam12666), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NAYF01000048.1 Streptococcus agalactiae strain NNA013 contig63, whole genome shotgun sequence (23298 bp)
Overview 1 RT 1: 553-3806 bp Neighborhood of RT #1 [553, 3806] RVT_N RVT-GII GIIM TraC-F-type Feature: gene Location: 553-2226 bp Feature: RT Description: RVT_N Location: 625-865 bp Feature: RT Description: RVT_N Location: 625 -865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 913-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 913-15 73 bp Feature: domain Description: GIIM Note: maturase Location: 1642-1861 bp Feature: domain Description: GIIM Note: maturase Location: 1642-1861 bp Feature: gene Location: 2231-3220 bp Feature: domain Description: TraC-F-type Location: 2477-3041 bp Feature: domain Description: TraC-F-type Location: 2477-3041 bp Feature: gene Location: 3213-3806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NAYF01000047.1 Streptococcus agalactiae strain NNA013 contig62, whole genome shotgun sequence (26922 bp)
Overview 1 RT 1: 1-4028 bp 2 RT 2: 20927-26005 bp Neighborhood of RT #1 [1, 4141] RVT_N RVT-GII GIIM VirB4 TraC-F-type TraC-F-type PrgI Neighborhood of RT #2 [20927, 26370] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM Feature: gene Location: 1-83 bp Feature: gene Location: 88-1761 bp Feature: RT Description: RVT_N Location: 160-400 bp Feature: RT Description: RVT_N Location: 16 0-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1177-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1177-1396 bp Feature: gene Location: 2290-3840 bp Feature: domain Description: VirB4 Location: 2419-2623 bp Feature: domain Description: VirB4 Location: 2419-26 23 bp Feature: domain Description: TraC-F-type Location: 2815-2962 bp Feature: domain Description: TraC-F-type Location: 2815-296 2 bp Feature: domain Description: TraC-F-type Location: 3145-3805 bp Feature: domain Description: TraC-F-type Location: 3145-3805 bp Feature: gene Location: 3743-4141 bp Feature: domain Description: PrgI Location: 3761-4028 bp Feature: domain Description: PrgI Location: 376 1-4028 bp Feature: gene Location: 20927-23728 bp Feature: domain Description: Peptidase_M23 Location: 22370-22583 bp Feature: domain Description: Peptidase_M23 Location: 22370-22583 bp Feature: domain Description: Phage_lysozyme2 Location: 22724-23237 bp Feature: domain Description: Phage_lysozyme2 Location: 22724-23237 bp Feature: domain Description: PRK08581 Location: 23354-23690 bp Feature: domain Description: PRK08581 Location: 23354-236 90 bp Feature: gene Location: 23730-24692 bp Feature: domain Description: TraC-F-type Location: 23823-24519 bp Feature: domain Description: TraC-F-type Location: 23823-24519 bp Feature: gene Location: 24697-26370 bp Feature: RT Description: RVT_N Location: 24769-25009 bp Feature: RT Description: RVT_N Location: 2476 9-25009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25057-25717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25057-25717 bp Feature: domain Description: GIIM Note: maturase Location: 25786-26005 bp Feature: domain Description: GIIM Note: maturase Location: 25786 -26 005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), TraC-F-type (TIGR02746), PrgI (pfam12666), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein)