myRT

myRT report for GCA_009935845.1_ASM993584v1

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Seq: QWEK01000012.1 Pseudoflavonifractor sp. 524-17 Scaffold5_1, whole genome shotgun sequence (173273 bp)
Overview 1 RT 1: 129925-133407 bp Neighborhood of RT #1 [129925, 133407] Avd_like RVT-DGRs Feature: gene Location: 129925-130821 bp Feature: gene Location: 130882-131307 bp Ori: NCE63904.1 Feature: domain Description: Avd_like Location: 130990-131266 bp Feature: domain Description: Avd_like Location: 1 30990-1 31 266 bp Feature: gene Location: 131607-133001 bp Ori: NCE63905.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 132075-132741 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 32075-1 32741 bp Feature: gene Location: 133020-133226 bp Feature: gene Location: 133207-133407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: QWEK01000035.1 Pseudoflavonifractor sp. 524-17 Scaffold27_1, whole genome shotgun sequence (36295 bp)
Overview 1 RT 1: 16059-21341 bp Neighborhood of RT #1 [16059, 21418] INT_ICEBs1_C_like RVT-UG2 OmpR HK_WalK HK_WalK Feature: gene Location: 16059-16283 bp Feature: gene Location: 16282-16668 bp Ori: NCE65456.1 Feature: domain Description: INT_ICEBs1_C_like Location: 16285-16609 bp Feature: domain Description: INT_ICEBs1_C_like Location: 162 85-16609 bp Feature: gene Location: 17678-19024 bp Ori: NCE65457.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 17876-18716 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 17876-18716 bp Feature: gene Location: 19659-20324 bp Ori: NCE65458.1 Feature: domain Description: OmpR Location: 19671-20316 bp Feature: domain Description: OmpR Location: 19671-2 0316 bp Feature: gene Location: 20321-21418 bp Ori: NCE65459.1 Feature: domain Description: HK_WalK Location: 20495-20750 bp Feature: domain Description: HK_WalK Location: 2 0495-2 0750 bp Feature: domain Description: HK_WalK Location: 20765-21341 bp Feature: domain Description: HK_WalK Location: 2 0765-2 1341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), RVT-UG2, OmpR (COG0745), HK_WalK (NF033092)

Seq: QWEK01000060.1 Pseudoflavonifractor sp. 524-17 Scaffold51_1, whole genome shotgun sequence (20994 bp)
Overview 1 RT 1: 74-5014 bp Neighborhood of RT #1 [74, 5082] VirB4_CagE RVT_N RVT-GII GIIM HNH TraC-F-type PrgI Feature: gene Location: 74-1069 bp Ori: NCE66102.1 Feature: domain Description: VirB4_CagE Location: 158-944 bp Feature: domain Description: VirB4_CagE Location: 158-944 bp Feature: gene Location: 1074-2777 bp Gene: ltrA Feature: domain Description: RVT_N Location: 1176-1410 bp Feature: domain Description: RVT_N Location: 1176-1410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1464-2124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1464-2124 bp Feature: domain Description: GIIM Note: maturase Location: 2178-2412 bp Feature: domain Description: GIIM Note: maturase Location: 2178-2412 bp Feature: domain Description: HNH Note: nucleases Location: 2625-2742 bp Feature: domain Description: HNH Note: nucleases Location: 2625-2742 bp Feature: gene Location: 3309-4736 bp Feature: domain Description: TraC-F-type Location: 3693-4725 bp Feature: domain Description: TraC-F-type Location: 3 693 -4725 bp Feature: gene Location: 4729-5082 bp Ori: NCE66103.1 Feature: domain Description: PrgI Location: 4741-5014 bp Feature: domain Description: PrgI Location: 4741-5014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4_CagE (TIGR00929), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), TraC-F-type (TIGR02746), PrgI (pfam12666)

Seq: QWEK01000027.1 Pseudoflavonifractor sp. 524-17 Scaffold19_1, whole genome shotgun sequence (68926 bp)
Overview 1 RT 1: 565-4772 bp Neighborhood of RT #1 [565, 4772] RVT-GII group_II_RT_mat HNHc TraC-F-type Feature: gene Location: 565-2364 bp Ori: NCE65077.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-164 8 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1855-1984 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1855-1984 bp Feature: domain Description: HNHc Note: nucleases Location: 2191-2344 bp Feature: domain Description: HNHc Note: nucleases Location: 2191-234 4 bp Feature: gene Location: 2484-3959 bp Feature: domain Description: TraC-F-type Location: 2538-3849 bp Feature: domain Description: TraC-F-type Location: 2538-384 9 bp Feature: gene Location: 3975-4772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507), TraC-F-type (TIGR02746)

Seq: QWEK01000104.1 Pseudoflavonifractor sp. 524-17 Scaffold96_1, whole genome shotgun sequence (2744 bp)
Overview 1 RT 1: 96-1119 bp Neighborhood of RT #1 [96, 2009] RVT-GII Feature: gene Location: 96-2009 bp Ori: NCE66514.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414-1119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414-1119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QWEK01000013.1 Pseudoflavonifractor sp. 524-17 Scaffold6_1, whole genome shotgun sequence (123552 bp)
Overview 1 RT 1: 119256-123487 bp Neighborhood of RT #1 [119256, 123531] RMtype1_S_Ara36733I_TRD1-CR1_like RMtype1_S_Eco2747II-TRD2-CR2-like RVT-GII SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Feature: gene Location: 119256-119852 bp Ori: NCE64058.1 Feature: domain Description: RMtype1_S_Ara36733I_TRD1-CR1_like Location: 119277-119820 bp Feature: domain Description: RMtype1_S_Ara36 733I_TRD1-CR1_like Location: 119277-119820 bp Feature: gene Location: 119881-120198 bp Ori: NCE64059.1 Feature: domain Description: RMtype1_S_Eco2747II-TRD2-CR2-like Location: 119953-120142 bp Feature: domain Description: RMtype1_S_Eco2747II-TRD2-CR2-like Location: 119953-120142 bp Feature: gene Location: 120555-122314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120873-121578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120873-121578 bp Feature: gene Location: 122245-123531 bp Ori: NCE64060.1 Feature: domain Description: SR_TndX_transposase Location: 122248-122341 bp Feature: domain Description: SR_TndX_transposase Location: 122248-122341 bp Feature: domain Description: Recombinase Location: 122437-122806 bp Feature: domain Description: Recombinase Location: 122437-122806 bp Feature: domain Description: Zn_ribbon_recom Location: 122839-123016 bp Feature: domain Description: Zn_ribbon_recom Location: 122839-123016 bp Feature: domain Description: DUF4368 Location: 123295-123487 bp Feature: domain Description: DUF436 8 Location: 123295-123487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_Ara36733I_TRD1-CR1_like (cd17268), RMtype1_S_Eco2747II-TRD2-CR2-like (cd17272), RVT-GII, SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)

Seq: QWEK01000017.1 Pseudoflavonifractor sp. 524-17 Scaffold10_1, whole genome shotgun sequence (92242 bp)
Overview 1 RT 1: 49430-56531 bp Neighborhood of RT #1 [49430, 56545] PLDc_N_DEXD_c DEXDc_RapA HepA RVT-GII HNHc T4SS-DNA_transf TnpW Feature: gene Location: 49430-52660 bp Ori: NCE64457.1 Feature: domain Description: PLDc_N_DEXD_c Location: 49445-49913 bp Feature: domain Description: PLDc_N_DEXD_c Location: 49445-49913 bp Feature: domain Description: DEXDc_RapA Location: 50168-50720 bp Feature: domain Description: DEXDc_RapA Location: 50168-507 20 bp Feature: domain Description: HepA Location: 51764-52163 bp Feature: domain Description: HepA Location: 517 64-52163 bp Feature: gene Location: 53181-53510 bp Feature: gene Location: 53663-55453 bp Ori: NCE64458.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53942-54650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53942-54650 bp Feature: domain Description: HNHc Note: nucleases Location: 55271-55376 bp Feature: domain Description: HNHc Note: nucleases Location: 5527 1-5537 6 bp Feature: gene Location: 56161-56340 bp Feature: domain Description: T4SS-DNA_transf Location: 56173-56317 bp Feature: domain Description: T4SS-DNA_transf Location: 5617 3-56317 bp Feature: gene Location: 56375-56545 bp Ori: NCE64459.1 Feature: domain Description: TnpW Location: 56435-56531 bp Feature: domain Description: TnpW Location: 56435-56531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), HepA (COG0553), RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534), TnpW (pfam14202)