myRT

myRT report for GCA_009936565.1_ASM993656v1

Download annotations/find similar RTs

Seq: JAABOX010000037.1 Serratia fonticola strain S14 Serratia_fonticola_S14_L001_R2_001_contig_37_1, whole genome shotgun sequence (221965 bp)
Overview 1 RT 1: 30807-38403 bp Neighborhood of RT #1 [30807, 38534] RVT-UG1 PDDEXK_4 Feature: gene Location: 30807-31670 bp Feature: gene Location: 32223-32657 bp Feature: gene Location: 32666-36373 bp Ori: NCG53474.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 33278-33788 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 33278-33788 bp Feature: gene Location: 37108-37743 bp Feature: gene Location: 37758-38534 bp Ori: NCG53476.1 Feature: domain Description: PDDEXK_4 Location: 37968-38403 bp Feature: domain Description: PDDEXK_4 Location: 37968-38403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, PDDEXK_4 (pfam14281)

Seq: JAABOX010000024.1 Serratia fonticola strain S14 Serratia_fonticola_S14_L001_R2_001_contig_24_1, whole genome shotgun sequence (325568 bp)
Overview 1 RT 1: 235091-239030 bp Neighborhood of RT #1 [235091, 239065] PRK15287 FimA RVT-UG4 Autoind_bind LuxR_C_like Feature: gene Location: 235091-235576 bp Ori: NCG52480.1 Feature: domain Description: PRK15287 Location: 235118-235574 bp Feature: domain Description: PRK152 87 Location: 2 35118-2 35574 bp Feature: gene Location: 235573-236106 bp Ori: NCG52481.1 Feature: domain Description: FimA Location: 235621-236104 bp Feature: domain Description: FimA Location: 2 3562 1-2 36104 bp Feature: gene Location: 236099-237061 bp Ori: NCG52482.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 236444-236885 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 36444-2 36885 bp Feature: gene Location: 237097-237930 bp Feature: gene Location: 238349-239065 bp Ori: NCG52484.1 Feature: domain Description: Autoind_bind Location: 238385-238805 bp Feature: domain Description: Autoind_bind Location: 2 38385-2 38805 bp Feature: domain Description: LuxR_C_like Location: 238871-239030 bp Feature: domain Description: LuxR_C_like Location: 2 38871-2 39030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15287 (fimbrial minor subunit StfF), FimA (pfam16970), RVT-UG4, Autoind_bind (pfam03472), LuxR_C_like (cd06170)

Seq: JAABOX010000033.1 Serratia fonticola strain S14 Serratia_fonticola_S14_L001_R2_001_contig_33_1, whole genome shotgun sequence (73523 bp)
Overview 1 RT 1: 21427-25215 bp Neighborhood of RT #1 [21427, 25229] STAS_anti-anti-sigma_factors RVT-GII PRK09290 PucG Feature: gene Location: 21427-21759 bp Ori: NCG53263.1 Feature: domain Description: STAS_anti-anti-sigma_factors Location: 21439-21724 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 2143 9-21724 bp Feature: gene Location: 21835-21981 bp Feature: gene Location: 22381-22623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22429-22591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22429-22591 bp Feature: gene Location: 22702-23988 bp Ori: NCG53265.1 Gene: hpxK Feature: domain Description: PRK09290 Location: 22735-23935 bp Feature: domain Description: PRK09290 Location: 2273 5-23 93 5 bp Feature: gene Location: 23988-25229 bp Ori: NCG53266.1 Feature: domain Description: PucG Location: 24027-25215 bp Feature: domain Description: PucG Location: 24027-25215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STAS_anti-anti-sigma_factors (cd07043), RVT-GII, PRK09290 (allantoate amidohydrolase; Reviewed), PucG (COG0075)