myRT

myRT report for GCA_009937635.1_ASM993763v1

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Seq: JAACFF010000593.1 Chloroflexi bacterium isolate bin.33 scaffold_39315, whole genome shotgun sequence (3718 bp)
Overview 1 RT 1: 436-2851 bp Neighborhood of RT #1 [436, 3625] COG4585 Flp RVT-GII Feature: gene Location: 436-1527 bp Feature: domain Description: COG4585 Location: 694-1480 bp Feature: domain Description: COG4585 Location: 694-1 480 bp Feature: gene Location: 1672-1818 bp Feature: domain Description: Flp Location: 1681-1816 bp Feature: domain Description: Flp Location: 1 681 -1 81 6 bp Feature: gene Location: 2407-3625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2602-2851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2602-2851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Flp (COG3847), RVT-GII, COG4585 (Signal transduction histidine kinase )

Seq: JAACFF010000606.1 Chloroflexi bacterium isolate bin.33 scaffold_40660, whole genome shotgun sequence (2790 bp)
Overview 1 RT 1: 110-2592 bp Neighborhood of RT #1 [110, 2592] RVT_N RVT-GII Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 110-850 bp Feature: RT Description: RVT_N Location: 143-389 bp Feature: RT Description: RVT_N Location: 143-389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-812 bp Feature: gene Location: 752-2440 bp Feature: domain Description: Resolvase Location: 770-1208 bp Feature: domain Description: Resolvase Location: 770-12 08 bp Feature: domain Description: Recombinase Location: 1298-1661 bp Feature: domain Description: Recombinase Location: 12 98-1661 bp Feature: domain Description: Zn_ribbon_recom Location: 1703-1904 bp Feature: domain Description: Zn_ribbon_recom Location: 1703-1904 bp Feature: gene Location: 2437-2592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: JAACFF010000558.1 Chloroflexi bacterium isolate bin.33 scaffold_33158, whole genome shotgun sequence (3162 bp)
Overview 1 RT 1: 1-2962 bp Neighborhood of RT #1 [1, 3162] bact_FAD_ox RVT-DGRs Feature: gene Location: 1-477 bp Feature: gene Location: 688-2091 bp Feature: domain Description: bact_FAD_ox Location: 811-2080 bp Feature: domain Description: bact_FAD_ox Location: 811-2080 bp Feature: gene Location: 2296-3162 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2314-2962 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23 14-2962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, bact_FAD_ox (TIGR01679)

Seq: JAACFF010000216.1 Chloroflexi bacterium isolate bin.33 scaffold_4753, whole genome shotgun sequence (10222 bp)
Overview 1 RT 1: 75-9086 bp Neighborhood of RT #1 [75, 9112] COG3666 DDE_Tnp_1_6 RVT_N RVT-GII GIIM HNH VCBS FG-GAP VCBS FG-GAP VCBS VCBS UnbV_ASPIC SAM_quin_mod XylH Feature: gene Location: 75-1727 bp Feature: domain Description: COG3666 Location: 111-549 bp Feature: domain Description: COG3666 Location: 111-54 9 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1281-1650 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1281-1650 bp Feature: gene Location: 2640-4373 bp Feature: RT Description: RVT_N Location: 2715-2958 bp Feature: RT Description: RVT_N Location: 2715-2958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3003-3648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3003-364 8 bp Feature: domain Description: GIIM Note: maturase Location: 3699-3933 bp Feature: domain Description: GIIM Note: maturase Location: 3699-3933 bp Feature: domain Description: HNH Note: nucleases Location: 4185-4320 bp Feature: domain Description: HNH Note: nucleases Location: 4 185-4 320 bp Feature: gene Location: 4599-7691 bp Feature: domain Description: VCBS Location: 4887-5112 bp Feature: domain Description: VCBS Location: 4 887-5112 bp Feature: domain Description: FG-GAP Location: 5211-5268 bp Feature: domain Description: FG-GAP Location: 5211-5268 bp Feature: domain Description: VCBS Location: 5337-5493 bp Feature: domain Description: VCBS Location: 5337-54 93 bp Feature: domain Description: FG-GAP Location: 5628-5688 bp Feature: domain Description: FG-GAP Location: 5628-5688 bp Feature: domain Description: VCBS Location: 5715-5856 bp Feature: domain Description: VCBS Location: 5715-5856 bp Feature: domain Description: VCBS Location: 6024-6129 bp Feature: domain Description: VCBS Location: 6024 -6129 bp Feature: domain Description: UnbV_ASPIC Location: 6147-6342 bp Feature: domain Description: UnbV_ASPIC Location: 614 7-634 2 bp Feature: domain Description: SAM_quin_mod Location: 6474-7446 bp Feature: domain Description: SAM_quin_mod Location: 64 74 -74 4 6 bp Feature: gene Location: 7787-9112 bp Feature: domain Description: XylH Location: 7955-9086 bp Feature: domain Description: XylH Location: 7955-9086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), VCBS (pfam13517), FG-GAP (pfam01839), UnbV_ASPIC (pfam07593), SAM_quin_mod (TIGR03981), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)