myRT

myRT report for GCA_009994765.1_ASM999476v1

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Seq: JAACQU010000120.1 Thiomicrospira sp. isolate CG_2015-04_44_610 CG_2015-04_curated_scaffold_217576, whole genome shotgun sequence (2002 bp)
Overview 1 RT 1: 111-1983 bp Neighborhood of RT #1 [111, 2000] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 111-356 bp Feature: gene Location: 381-2000 bp Feature: domain Description: RVT_N Location: 426-666 bp Feature: domain Description: RVT_N Location: 426-666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 4-1 350 bp Feature: domain Description: GIIM Note: maturase Location: 1401-1635 bp Feature: domain Description: GIIM Note: maturase Location: 1 401 -1 635 bp Feature: domain Description: HNHc Note: nucleases Location: 1857-1983 bp Feature: domain Description: HNHc Note: nucleases Location: 1 857-1 983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAACQU010000041.1 Thiomicrospira sp. isolate CG_2015-04_44_610 CG_2015-04_curated_scaffold_224, whole genome shotgun sequence (72605 bp)
Overview 1 RT 1: 28-6083 bp Neighborhood of RT #1 [28, 6083] CRISPR_Cas6 RVT-CRISPR Cas_Cas1 TIGR03986 Feature: gene Location: 28-168 bp Feature: gene Location: 598-3543 bp Feature: domain Description: CRISPR_Cas6 Location: 1171-1498 bp Feature: domain Description: CRISPR_Cas6 Location: 1171-1498 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1738-2347 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1738-2 347 bp Feature: domain Description: Cas_Cas1 Location: 2566-3403 bp Feature: domain Description: Cas_Cas1 Location: 2 566-3403 bp Feature: gene Location: 3544-5607 bp Feature: domain Description: TIGR03986 Location: 3565-5080 bp Feature: domain Description: TIGR03986 Location: 3565-5080 bp Feature: gene Location: 5607-6083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas_Cas1 (pfam01867), TIGR03986 (CRISPR-associated protein)