myRT

myRT report for GCA_009996105.1_ASM999610v1

Download annotations/find similar RTs

Seq: JAADAW010000006.1 Microcystis aeruginosa K13-10 Ga0188026_100038, whole genome shotgun sequence (70456 bp)
Overview 1 RT 1: 11225-14904 bp Neighborhood of RT #1 [11225, 14904] HAS-barrel NdhS RVT_N RVT-GII GIIM HNHc Feature: gene Location: 11225-11899 bp Feature: domain Description: HAS-barrel Location: 11279-11537 bp Feature: domain Description: HAS-barrel Location: 1 1 279-1 1 537 bp Feature: gene Location: 11902-12096 bp Feature: domain Description: NdhS Location: 11908-12061 bp Feature: domain Description: NdhS Location: 1 1 908-1 2061 bp Feature: gene Location: 12197-14044 bp Feature: domain Description: RVT_N Location: 12263-12506 bp Feature: domain Description: RVT_N Location: 1 2263-1 2506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12551-13220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2551 -1 3220 bp Feature: domain Description: GIIM Note: maturase Location: 13325-13550 bp Feature: domain Description: GIIM Note: maturase Location: 1 3325-1 3550 bp Feature: domain Description: HNHc Note: nucleases Location: 13772-13916 bp Feature: domain Description: HNHc Note: nucleases Location: 1 3772-1 391 6 bp Feature: gene Location: 14127-14330 bp Feature: gene Location: 14722-14904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAS-barrel (pfam09378), NdhS (pfam11623), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAADAW010000086.1 Microcystis aeruginosa K13-10 Ga0188026_100140, whole genome shotgun sequence (14687 bp)
Overview 1 RT 1: 138-4004 bp Neighborhood of RT #1 [138, 4012] RVT-GII RVT-GII GIIM McrA NlpD NlpD Feature: gene Location: 138-434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141-432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141-432 bp Feature: gene Location: 480-1556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 516-738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 516-738 bp Feature: domain Description: GIIM Note: maturase Location: 837-1065 bp Feature: domain Description: GIIM Note: maturase Location: 837-1065 bp Feature: domain Description: McrA Location: 1176-1443 bp Feature: domain Description: McrA Location: 1176-1443 bp Feature: gene Location: 1852-1995 bp Feature: gene Location: 2159-4012 bp Feature: domain Description: NlpD Location: 2462-2735 bp Feature: domain Description: NlpD Location: 2 462 -2 735 bp Feature: domain Description: NlpD Location: 3032-4004 bp Feature: domain Description: NlpD Location: 3032 -4004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), NlpD (COG0739)

Seq: JAADAW010000224.1 Microcystis aeruginosa K13-10 Ga0188026_100349, whole genome shotgun sequence (6611 bp)
Overview 1 RT 1: 4300-6215 bp Neighborhood of RT #1 [4300, 6379] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Feature: gene Location: 4300-4479 bp Feature: domain Description: Cas2_I_II_III Location: 4306-4444 bp Feature: domain Description: Cas2_I_II_III Location: 43 06-4444 bp Feature: gene Location: 4575-5681 bp Feature: domain Description: Cas1_I-II-III Location: 4686-5643 bp Feature: domain Description: Cas1_I-II-III Location: 4686-5643 bp Feature: gene Location: 5684-6379 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5690-6215 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5690-6215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR