myRT

myRT report for GCA_010021615.1_ASM1002161v1

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Seq: RGND01000241.1 Chitinophagia bacterium isolate WB8_1B_193 contig_100_240, whole genome shotgun sequence (4625 bp)
Overview 1 RT 1: 2-4564 bp Neighborhood of RT #1 [2, 4614] DUF4219 Retrotran_gag_2 zf-CCHC gag_pre-integrs rve RVT-DGRs RNase_HI_RT_Ty1 Feature: gene Location: 2-1168 bp Feature: domain Description: DUF4219 Location: 56-131 bp Feature: domain Description: DUF421 9 Location: 56-1 31 bp Feature: domain Description: Retrotran_gag_2 Location: 185-590 bp Feature: domain Description: Retrotran_gag_2 Location: 1 85-590 bp Feature: domain Description: zf-CCHC Location: 668-713 bp Feature: domain Description: zf-CCHC Location: 668-71 3 bp Feature: gene Location: 1223-1486 bp Feature: gene Location: 1756-4614 bp Feature: domain Description: gag_pre-integrs Location: 1843-2056 bp Feature: domain Description: gag_pre-integrs Location: 1 843-2056 bp Feature: domain Description: rve Location: 2101-2440 bp Feature: domain Description: rve Location: 21 01 -2440 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3604-3733 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3604-3733 bp Feature: domain Description: RNase_HI_RT_Ty1 Location: 4153-4564 bp Feature: domain Description: RNase_HI_RT_Ty1 Location: 41 53-4564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gag_pre-integrs (pfam13976), rve (pfam00665), RVT-DGRs, RNase_HI_RT_Ty1 (cd09272), DUF4219 (pfam13961), Retrotran_gag_2 (pfam14223), zf-CCHC (pfam00098)

Seq: RGND01000412.1 Chitinophagia bacterium isolate WB8_1B_193 contig_100_411, whole genome shotgun sequence (2488 bp)
Overview 1 RT 1: 200-2477 bp Neighborhood of RT #1 [200, 2485] RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 200-355 bp Feature: gene Location: 547-1791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1402 bp Feature: domain Description: GIIM Note: maturase Location: 1486-1711 bp Feature: domain Description: GIIM Note: maturase Location: 1486-1711 bp Feature: gene Location: 2081-2254 bp Feature: gene Location: 2273-2485 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2276-2477 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 2 76-2 477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: RGND01000609.1 Chitinophagia bacterium isolate WB8_1B_193 contig_100_608, whole genome shotgun sequence (1709 bp)
Overview 1 RT 1: 637-1705 bp Neighborhood of RT #1 [637, 1707] Hrd RVT-DGRs Feature: gene Location: 637-810 bp Feature: gene Location: 848-988 bp Feature: domain Description: Hrd Location: 884-956 bp Feature: domain Description: Hrd Location: 884-956 bp Feature: gene Location: 1123-1707 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1189-1705 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1189-1705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Hrd (LOAD_Hrd)