myRT

myRT report for GCA_010026065.1_ASM1002606v1

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Seq: RGPV01000103.1 Alphaproteobacteria bacterium isolate WB8_3_131 contig_100_102, whole genome shotgun sequence (3852 bp)
Overview 1 RT 1: 1-3751 bp Neighborhood of RT #1 [1, 3849] TnpB_IS66 RVT-GII GIIM LZ_Tnp_IS66 DDE_Tnp_1 Feature: gene Location: 1-129 bp Feature: domain Description: TnpB_IS66 Location: 16-79 bp Feature: domain Description: TnpB_IS66 Location: 1 6-79 bp Feature: gene Location: 598-1881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 814-1483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 4-1 483 bp Feature: domain Description: GIIM Note: maturase Location: 1570-1795 bp Feature: domain Description: GIIM Note: maturase Location: 1 570-1 795 bp Feature: gene Location: 2119-2553 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2308-2413 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2308-241 3 bp Feature: gene Location: 2983-3849 bp Feature: domain Description: DDE_Tnp_1 Location: 3421-3751 bp Feature: domain Description: DDE_Tnp_1 Location: 3421 -3751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), DDE_Tnp_1 (pfam01609)

Seq: RGPV01000223.1 Alphaproteobacteria bacterium isolate WB8_3_131 contig_100_222, whole genome shotgun sequence (2464 bp)
Overview 1 RT 1: 483-1857 bp Neighborhood of RT #1 [483, 2207] PKc_Myt1 PKc_Myt1 RVT-G2L Feature: gene Location: 483-1019 bp Feature: domain Description: PKc_Myt1 Location: 489-618 bp Feature: domain Description: PKc_Myt1 Location: 489-618 bp Feature: domain Description: PKc_Myt1 Location: 870-993 bp Feature: domain Description: PKc_Myt1 Location: 870-993 bp Feature: gene Location: 1023-2207 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 1200-1857 bp Feature: RT Description: RVT-G2 L Note: G2 L RT Location: 12 00-1857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PKc_Myt1 (cd14050), RVT-G2L

Seq: RGPV01000027.1 Alphaproteobacteria bacterium isolate WB8_3_131 contig_100_26, whole genome shotgun sequence (8434 bp)
Overview 1 RT 1: 5839-8292 bp Neighborhood of RT #1 [5839, 8432] RVT_N RVT-GII rve_3 Feature: gene Location: 5839-6369 bp Feature: gene Location: 6990-7124 bp Feature: gene Location: 7349-7801 bp Feature: domain Description: RVT_N Location: 7367-7607 bp Feature: domain Description: RVT_N Location: 73 67-7607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7655-7799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7655-7799 bp Feature: gene Location: 7929-8432 bp Feature: domain Description: rve_3 Location: 8100-8292 bp Feature: domain Description: rve_3 Location: 8100-8292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, rve_3 (pfam13683)

Seq: RGPV01000047.1 Alphaproteobacteria bacterium isolate WB8_3_131 contig_100_46, whole genome shotgun sequence (6243 bp)
Overview 1 RT 1: 1811-5021 bp Neighborhood of RT #1 [1811, 5021] DDE_Tnp_1_5 RVT-GII DDE_Tnp_1 Feature: gene Location: 1811-2023 bp Feature: gene Location: 2169-2513 bp Feature: domain Description: DDE_Tnp_1_5 Location: 2265-2505 bp Feature: domain Description: DDE_Tnp_1_5 Location: 2265-2505 bp Feature: gene Location: 2610-3914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2892-3561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2892-3561 bp Feature: gene Location: 4396-4734 bp Feature: domain Description: DDE_Tnp_1 Location: 4462-4684 bp Feature: domain Description: DDE_Tnp_1 Location: 4 4 62-4 684 bp Feature: gene Location: 4866-5021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: RGPV01000048.1 Alphaproteobacteria bacterium isolate WB8_3_131 contig_100_47, whole genome shotgun sequence (6172 bp)
Overview 1 RT 1: 967-6162 bp Neighborhood of RT #1 [967, 6170] rve ExeA RVT-GII GIIM YbcV Feature: gene Location: 967-2628 bp Feature: domain Description: rve Location: 1441-1846 bp Feature: domain Description: rve Location: 1441-1846 bp Feature: gene Location: 2643-3611 bp Feature: domain Description: ExeA Location: 2718-3429 bp Feature: domain Description: ExeA Location: 2718-3429 bp Feature: gene Location: 4273-5511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4471-5122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4471-5 122 bp Feature: domain Description: GIIM Note: maturase Location: 5203-5416 bp Feature: domain Description: GIIM Note: maturase Location: 5 203-5 416 bp Feature: gene Location: 5835-6170 bp Feature: domain Description: YbcV Location: 5838-6162 bp Feature: domain Description: YbcV Location: 5 838-6162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), ExeA (COG3267), RVT-GII, GIIM (pfam08388), YbcV (COG5562)

Seq: RGPV01000574.1 Alphaproteobacteria bacterium isolate WB8_3_131 contig_100_573, whole genome shotgun sequence (1255 bp)
Overview 1 RT 1: 2-1230 bp Neighborhood of RT #1 [2, 1253] RVT-GII GIIM MFS_ShiA_like Feature: gene Location: 2-556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44-158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44-158 bp Feature: domain Description: GIIM Note: maturase Location: 233-452 bp Feature: domain Description: GIIM Note: maturase Location: 233-452 bp Feature: gene Location: 597-1253 bp Feature: domain Description: MFS_ShiA_like Location: 663-1230 bp Feature: domain Description: MFS_ShiA_like Location: 6 6 3-1230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MFS_ShiA_like (cd17369)