myRT

myRT report for GCA_010027295.1_ASM1002729v1

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Seq: RGVM01000331.1 Chitinophagia bacterium isolate WB9_2_351 contig_100_330, whole genome shotgun sequence (3780 bp)
Overview 1 RT 1: 2-3692 bp Neighborhood of RT #1 [2, 3778] retropepsin_like RT_Rtv RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve CD_CSD Feature: gene Location: 2-3778 bp Feature: domain Description: retropepsin_like Location: 20-278 bp Feature: domain Description: retropepsin_like Location: 20-278 bp Feature: domain Description: RT_Rtv Location: 767-1079 bp Feature: domain Description: RT_Rtv Location: 767-1 079 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1250-1394 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 250-1 394 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1694-2045 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1 694-2045 bp Feature: domain Description: Integrase_H2C2 Location: 2429-2600 bp Feature: domain Description: Integrase_H2C2 Location: 2429-2600 bp Feature: domain Description: rve Location: 2666-2984 bp Feature: domain Description: rve Location: 2666-2984 bp Feature: domain Description: CD_CSD Location: 3548-3692 bp Feature: domain Description: CD_CSD Location: 3548-3692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RT_Rtv (cd01645), RVT-UG4/RVT-UG26/RVT-UG21/RVT-DGRs(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_CSD (cl28914)

Seq: RGVM01000439.1 Chitinophagia bacterium isolate WB9_2_351 contig_100_438, whole genome shotgun sequence (2789 bp)
Overview 1 RT 1: 3-1512 bp Neighborhood of RT #1 [3, 2786] RVT-UNC Feature: gene Location: 3-2786 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 963-1512 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 963-1512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-CRISPR/RVT-DGRs(RVT-UNC)

Seq: RGVM01000638.1 Chitinophagia bacterium isolate WB9_2_351 contig_100_637, whole genome shotgun sequence (1621 bp)
Overview 1 RT 1: 1-1621 bp Neighborhood of RT #1 [1, 1620] RT_ZFREV_like RVT-DGRs RNase_HI_RT_Ty3 Feature: gene Location: 1-1620 bp Feature: domain Description: RT_ZFREV_like Location: 388-727 bp Feature: domain Description: RT_ZFREV_like Location: 3 88-727 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 883-1024 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 883 -1024 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1324-1621 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 13 24-1621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_ZFREV_like (cd03715), RVT-DGRs, RNase_HI_RT_Ty3 (cd09274)

Seq: RGVM01000640.1 Chitinophagia bacterium isolate WB9_2_351 contig_100_639, whole genome shotgun sequence (1620 bp)
Overview 1 RT 1: 2-1421 bp Neighborhood of RT #1 [2, 1618] DUF3072 dnaG RVT-GII Feature: gene Location: 2-205 bp Feature: domain Description: DUF3072 Location: 44-191 bp Feature: domain Description: DUF3072 Location: 4 4 -191 bp Feature: gene Location: 202-867 bp Feature: domain Description: dnaG Location: 478-850 bp Feature: domain Description: dnaG Location: 4 78-850 bp Feature: gene Location: 1031-1618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1109-1421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1109-14 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3072 (pfam11272), dnaG (TIGR01391), RVT-GII

Seq: RGVM01000009.1 Chitinophagia bacterium isolate WB9_2_351 contig_100_8, whole genome shotgun sequence (16590 bp)
Overview 1 RT 1: 7422-11869 bp Neighborhood of RT #1 [7422, 11869] Peptidase_M54 RVT-UG3 Feature: gene Location: 7422-8231 bp Feature: domain Description: Peptidase_M54 Location: 7734-8208 bp Feature: domain Description: Peptidase_M5 4 Location: 7734-8208 bp Feature: gene Location: 8314-9096 bp Feature: gene Location: 9290-10573 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 9875-10277 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 9875 -10277 bp Feature: gene Location: 10573-11373 bp Feature: gene Location: 11378-11869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M54 (pfam07998), RVT-UG3