myRT

myRT report for GCA_010028605.1_ASM1002860v1

Download annotations/find similar RTs

Seq: RHBQ01001379.1 Alphaproteobacteria bacterium isolate WBB_8_016 contig_100_1378, whole genome shotgun sequence (1230 bp)
Overview 1 RT 1: 3-999 bp Neighborhood of RT #1 [3, 1091] RVT-GII Feature: gene Location: 3-254 bp Feature: gene Location: 315-1091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 597-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 597-999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RHBQ01001427.1 Alphaproteobacteria bacterium isolate WBB_8_016 contig_100_1426, whole genome shotgun sequence (1200 bp)
Overview 1 RT 1: 1-1176 bp Neighborhood of RT #1 [1, 1199] RVT-UG17 RT_RNaseH_2 RT_LTR Feature: gene Location: 1-600 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 31-181 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 31-181 bp Feature: domain Description: RT_RNaseH_2 Location: 376-601 bp Feature: domain Description: RT_RNaseH_2 Location: 376-601 bp Feature: gene Location: 609-1199 bp Feature: domain Description: RT_LTR Location: 867-1176 bp Feature: domain Description: RT_LTR Location: 867-1176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, RT_RNaseH_2 (pfam17919), RT_LTR (cd01647)

Seq: RHBQ01000150.1 Alphaproteobacteria bacterium isolate WBB_8_016 contig_100_149, whole genome shotgun sequence (5970 bp)
Overview 1 RT 1: 1986-5126 bp Neighborhood of RT #1 [1986, 5131] SUKH_6 RVT-GII COG5481 GMP_PMI Feature: gene Location: 1986-2405 bp Feature: gene Location: 2493-3005 bp Feature: domain Description: SUKH_6 Location: 2592-2925 bp Feature: domain Description: SUKH_6 Location: 2592-2925 bp Feature: gene Location: 3103-3315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3250-3313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 250-3 3 13 bp Feature: gene Location: 3426-3629 bp Feature: domain Description: COG5481 Location: 3429-3627 bp Feature: domain Description: COG5481 Location: 3 429-3 627 bp Feature: gene Location: 3737-5131 bp Feature: domain Description: GMP_PMI Location: 3746-5126 bp Feature: domain Description: GMP_PMI Location: 3 746-5126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUKH_6 (pfam14568), RVT-GII, COG5481 (Uncharacterized protein ), GMP_PMI (TIGR01479)

Seq: RHBQ01000215.1 Alphaproteobacteria bacterium isolate WBB_8_016 contig_100_214, whole genome shotgun sequence (4853 bp)
Overview 1 RT 1: 1750-4732 bp Neighborhood of RT #1 [1750, 4782] Transposase_31 RVT_N RVT-GII GIIM HNHc Transposase_31 Feature: gene Location: 1750-2088 bp Feature: domain Description: Transposase_31 Location: 1801-2026 bp Feature: domain Description: Transposase_31 Location: 1801-2026 bp Feature: gene Location: 2205-2396 bp Feature: gene Location: 2588-4315 bp Feature: domain Description: RVT_N Location: 2645-2891 bp Feature: domain Description: RVT_N Location: 264 5-2891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2939-3584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2939-3584 bp Feature: domain Description: GIIM Note: maturase Location: 3683-3890 bp Feature: domain Description: GIIM Note: maturase Location: 3683-3890 bp Feature: domain Description: HNHc Note: nucleases Location: 4088-4256 bp Feature: domain Description: HNHc Note: nucleases Location: 4 088-4 256 bp Feature: gene Location: 4387-4782 bp Feature: domain Description: Transposase_31 Location: 4390-4732 bp Feature: domain Description: Transposase_31 Location: 4 390-4 732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_31 (pfam04754), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: RHBQ01000400.1 Alphaproteobacteria bacterium isolate WBB_8_016 contig_100_399, whole genome shotgun sequence (3064 bp)
Overview 1 RT 1: 1-2218 bp Neighborhood of RT #1 [1, 2218] KOG4768 RVT-GII RVT-GII group_II_RT_mat Feature: gene Location: 1-252 bp Feature: gene Location: 437-1054 bp Feature: domain Description: KOG4768 Location: 449-1040 bp Feature: domain Description: KOG4768 Location: 449-1040 bp Feature: gene Location: 1137-1340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1308 bp Feature: gene Location: 1564-1875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1567-1867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 67-1867 bp Feature: gene Location: 1907-2077 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1916-2069 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1916-2069 bp Feature: gene Location: 2084-2218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: RHBQ01000520.1 Alphaproteobacteria bacterium isolate WBB_8_016 contig_100_519, whole genome shotgun sequence (2551 bp)
Overview 1 RT 1: 267-1930 bp Neighborhood of RT #1 [267, 2550] RVT-UNC Feature: gene Location: 267-398 bp Feature: gene Location: 802-2550 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1453-1930 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1453-1930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG6/RVT-UG10/RVT-CRISPR/RVT-UG26(RVT-UNC)

Seq: RHBQ01000634.1 Alphaproteobacteria bacterium isolate WBB_8_016 contig_100_633, whole genome shotgun sequence (2189 bp)
Overview 1 RT 1: 2-1637 bp Neighborhood of RT #1 [2, 1993] RVT-GII Feature: gene Location: 2-298 bp Feature: gene Location: 665-1993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII