myRT

myRT report for GCA_010032505.1_ASM1003250v1

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Seq: RGPX01000127.1 Gammaproteobacteria bacterium isolate WB8_3_208 contig_100_126, whole genome shotgun sequence (5210 bp)
Overview 1 RT 1: 2199-5141 bp Neighborhood of RT #1 [2199, 5141] ORF6N PinE RVT_N RVT-GII GIIM Feature: gene Location: 2199-2357 bp Feature: domain Description: ORF6N Location: 2235-2346 bp Feature: domain Description: ORF6N Location: 2235-2346 bp Feature: gene Location: 2369-2797 bp Feature: domain Description: PinE Location: 2459-2783 bp Feature: domain Description: PinE Location: 2459-2783 bp Feature: gene Location: 2837-4390 bp Feature: domain Description: RVT_N Location: 2909-3152 bp Feature: domain Description: RVT_N Location: 2909-31 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3197-3830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 97-3830 bp Feature: domain Description: GIIM Note: maturase Location: 3887-4118 bp Feature: domain Description: GIIM Note: maturase Location: 3887-41 1 8 bp Feature: gene Location: 4530-4874 bp Feature: gene Location: 4956-5141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ORF6N (pfam10543), PinE (COG1961), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: RGPX01000239.1 Gammaproteobacteria bacterium isolate WB8_3_208 contig_100_238, whole genome shotgun sequence (3267 bp)
Overview 1 RT 1: 448-2279 bp Neighborhood of RT #1 [448, 2279] RVT-GII Feature: gene Location: 448-1767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1414 bp Feature: gene Location: 1949-2080 bp Feature: gene Location: 2124-2279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RGPX01000449.1 Gammaproteobacteria bacterium isolate WB8_3_208 contig_100_448, whole genome shotgun sequence (1891 bp)
Overview 1 RT 1: 3-1849 bp Neighborhood of RT #1 [3, 1890] Transposase_31 RVT-UG18 HTH_7 Feature: gene Location: 3-461 bp Feature: domain Description: Transposase_31 Location: 6-438 bp Feature: domain Description: Transposase_3 1 Location: 6-43 8 bp Feature: gene Location: 738-1682 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 960-1542 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 960-1542 bp Feature: gene Location: 1744-1890 bp Feature: domain Description: HTH_7 Location: 1765-1849 bp Feature: domain Description: HTH_7 Location: 1765-1849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_31 (pfam04754), RVT-UG18, HTH_7 (pfam02796)

Seq: RGPX01000676.1 Gammaproteobacteria bacterium isolate WB8_3_208 contig_100_675, whole genome shotgun sequence (1350 bp)
Overview 1 RT 1: 2-1348 bp Neighborhood of RT #1 [2, 1348] RVT-DGRs Feature: gene Location: 2-775 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5-494 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5-4 94 bp Feature: gene Location: 788-1018 bp Feature: gene Location: 1067-1348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs