myRT

myRT report for GCA_010119225.1_ASM1011922v1

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Seq: WNKF01000001.1 Cyclobacterium sp. SYSU L10180 NODE_1_length_694865_cov_56.6344_ID_7915, whole genome shotgun sequence (694865 bp)
Overview 1 RT 1: 317526-324893 bp Neighborhood of RT #1 [317526, 324901] RVT-Retrons DUF262 AlbA_2 PQQ_mGDH Feature: gene Location: 317526-317747 bp Feature: gene Location: 318041-319291 bp Feature: gene Location: 319454-320536 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 319664-320279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 9664-320279 bp Feature: gene Location: 320775-322562 bp Feature: domain Description: DUF262 Location: 320871-321291 bp Feature: domain Description: DUF262 Location: 320871 -321 291 bp Feature: domain Description: AlbA_2 Location: 322095-322521 bp Feature: domain Description: AlbA_2 Location: 322095-322521 bp Feature: gene Location: 322790-324901 bp Feature: domain Description: PQQ_mGDH Location: 322901-324893 bp Feature: domain Description: PQQ_mGDH Location: 322901 -324893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF262 (pfam03235), AlbA_2 (pfam04326), PQQ_mGDH (cd10280)

Seq: WNKF01000035.1 Cyclobacterium sp. SYSU L10180 NODE_35_length_4517_cov_66.9901_ID_7983, whole genome shotgun sequence (4517 bp)
Overview 1 RT 1: 1-4517 bp Neighborhood of RT #1 [1, 4516] RVT-CRISPR-like COG3324 HTH_18 RVT-GII Feature: gene Location: 1-147 bp Feature: gene Location: 265-648 bp Feature: gene Location: 705-1004 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 708-888 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 708-888 bp Feature: gene Location: 1353-1847 bp Feature: domain Description: COG3324 Location: 1479-1842 bp Feature: domain Description: COG332 4 Location: 1479-1842 bp Feature: gene Location: 1924-2235 bp Feature: domain Description: HTH_18 Location: 1984-2197 bp Feature: domain Description: HTH_18 Location: 1984-2 197 bp Feature: gene Location: 3650-3898 bp Feature: gene Location: 4012-4191 bp Feature: gene Location: 4202-4516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4397-4517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4397-4517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, COG3324 (Predicted enzyme related to lactoylglutathione lyase ), HTH_18 (pfam12833), RVT-GII

Seq: WNKF01000044.1 Cyclobacterium sp. SYSU L10180 NODE_44_length_2171_cov_169.72_ID_8001, whole genome shotgun sequence (2171 bp)
Overview 1 RT 1: 78-1914 bp Neighborhood of RT #1 [78, 2042] RVT_N RVT-GII YkfC Feature: gene Location: 78-302 bp Feature: gene Location: 558-2042 bp Feature: domain Description: RVT_N Location: 624-864 bp Feature: domain Description: RVT_N Location: 624-864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912-1551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912-1551 bp Feature: domain Description: YkfC Location: 1686-1914 bp Feature: domain Description: YkfC Location: 1686-1914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: WNKF01000049.1 Cyclobacterium sp. SYSU L10180 NODE_49_length_1586_cov_81.2123_ID_8011, whole genome shotgun sequence (1586 bp)
Overview 1 RT 1: 1-1337 bp Neighborhood of RT #1 [1, 1522] RVT-GII GIIM Feature: gene Location: 1-132 bp Feature: gene Location: 242-1522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-1052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 37-1052 bp Feature: domain Description: GIIM Note: maturase Location: 1127-1337 bp Feature: domain Description: GIIM Note: maturase Location: 1127-1337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WNKF01000052.1 Cyclobacterium sp. SYSU L10180 NODE_52_length_1163_cov_87.1236_ID_8017, whole genome shotgun sequence (1163 bp)
Overview 1 RT 1: 1-1160 bp Neighborhood of RT #1 [1, 1160] RVT-GII RVT-GII Feature: gene Location: 1-291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-208 bp Feature: gene Location: 344-913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539-848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 39-848 bp Feature: gene Location: 924-1160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII