myRT

myRT report for GCA_010119635.1_ASM1011963v1

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Seq: WSEX01000002.1 Photorhabdus laumondii subsp. laumondii strain C-IL9 C_IL9_5_scf0002, whole genome shotgun sequence (195873 bp)
Overview 1 RT 1: 69694-72532 bp Neighborhood of RT #1 [69694, 72532] HTH_29 HTH_29 HTH_33 DDE_3 RVT-GII DDE_Tnp_Tn3 Feature: gene Location: 69694-70041 bp Feature: domain Description: HTH_29 Location: 69799-69964 bp Feature: domain Description: HTH_29 Location: 69799-69964 bp Feature: gene Location: 70070-71116 bp Feature: domain Description: HTH_29 Location: 70175-70343 bp Feature: domain Description: HTH_29 Location: 701 75-70343 bp Feature: domain Description: HTH_33 Location: 70379-70541 bp Feature: domain Description: HTH_33 Location: 70379-70541 bp Feature: domain Description: DDE_3 Location: 70583-71012 bp Feature: domain Description: DDE_3 Location: 70583-71 01 2 bp Feature: gene Location: 71262-71642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71466-71532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 466-71 532 bp Feature: gene Location: 71769-72146 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 71787-72048 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 71 787-72048 bp Feature: gene Location: 72074-72532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, DDE_Tnp_Tn3 (pfam01526)

Seq: WSEX01000003.1 Photorhabdus laumondii subsp. laumondii strain C-IL9 C_IL9_5_scf0003, whole genome shotgun sequence (194264 bp)
Overview 1 RT 1: 192305-194028 bp Neighborhood of RT #1 [192305, 194171] RVT-GII Feature: gene Location: 192305-192925 bp Feature: gene Location: 193082-193270 bp Feature: gene Location: 193329-194171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193335-194028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193335-19402 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WSEX01000037.1 Photorhabdus laumondii subsp. laumondii strain C-IL9 C_IL9_5_scf0037, whole genome shotgun sequence (52155 bp)
Overview 1 RT 1: 30049-32831 bp Neighborhood of RT #1 [30049, 32831] arc_metj RVT-Retrons Feature: gene Location: 30049-30306 bp Feature: domain Description: arc_metj Location: 30172-30283 bp Feature: domain Description: arc_metj Location: 3 0172-3 0283 bp Feature: gene Location: 30498-30701 bp Feature: gene Location: 30732-31913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30882-31458 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 0882-3 1458 bp Feature: gene Location: 31903-32430 bp Feature: gene Location: 32643-32831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT-Retrons

Seq: WSEX01000045.1 Photorhabdus laumondii subsp. laumondii strain C-IL9 C_IL9_5_scf0045, whole genome shotgun sequence (40826 bp)
Overview 1 RT 1: 34846-40374 bp Neighborhood of RT #1 [34846, 40374] DUF2235 DUF2235 RVT-GII Endotoxin_N Feature: gene Location: 34846-35046 bp Feature: gene Location: 35658-37220 bp Feature: domain Description: DUF2235 Location: 35733-36180 bp Feature: domain Description: DUF2235 Location: 35733-36180 bp Feature: domain Description: DUF2235 Location: 36231-36528 bp Feature: domain Description: DUF2235 Location: 36231-36528 bp Feature: gene Location: 37585-38130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37969-38050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37969-38050 bp Feature: gene Location: 38648-39901 bp Feature: domain Description: Endotoxin_N Location: 38762-39272 bp Feature: domain Description: Endotoxin_N Location: 38762-39272 bp Feature: gene Location: 39940-40374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2235 (pfam09994), RVT-GII, Endotoxin_N (pfam03945)

Seq: WSEX01000104.1 Photorhabdus laumondii subsp. laumondii strain C-IL9 C_IL9_5_scf0104, whole genome shotgun sequence (7310 bp)
Overview 1 RT 1: 3-7304 bp Neighborhood of RT #1 [3, 7309] RVT-GII RVT-GII GIIM RVT-GII FMT_core_NRPS_like FMT_C_OzmH_like PRK12467 PRK12467 Feature: gene Location: 3-629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120-603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120-603 bp Feature: gene Location: 813-1010 bp Feature: gene Location: 1007-2416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1361-2018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1361-2018 bp Feature: domain Description: GIIM Note: maturase Location: 2099-2318 bp Feature: domain Description: GIIM Note: maturase Location: 2099-2318 bp Feature: gene Location: 2413-2973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2485-2671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2485 -2671 bp Feature: gene Location: 3539-7309 bp Feature: domain Description: FMT_core_NRPS_like Location: 3653-4148 bp Feature: domain Description: FMT_core_NRPS_like Location: 365 3-4148 bp Feature: domain Description: FMT_C_OzmH_like Location: 4226-4520 bp Feature: domain Description: FMT_C_OzmH_like Location: 4226-45 20 bp Feature: domain Description: PRK12467 Location: 5141-7091 bp Feature: domain Description: PRK12467 Location: 5 141-7091 bp Feature: domain Description: PRK12467 Location: 7142-7304 bp Feature: domain Description: PRK12467 Location: 7142-7304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FMT_core_NRPS_like (cd08649), FMT_C_OzmH_like (cd08700), PRK12467 (peptide synthase; Provisional)