myRT

myRT report for GCA_010119645.1_ASM1011964v1

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Seq: WSEY01000013.1 Photorhabdus bodei strain CN4 CN4_25_scf0013, whole genome shotgun sequence (102453 bp)
Overview 1 RT 1: 98844-101568 bp Neighborhood of RT #1 [98844, 101576] RVT-GII GIIM ParE Feature: gene Location: 98844-99224 bp Feature: gene Location: 99856-100077 bp Feature: gene Location: 100095-100694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100158-100443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 001 58-1 00443 bp Feature: domain Description: GIIM Note: maturase Location: 100527-100665 bp Feature: domain Description: GIIM Note: maturase Location: 1 00527-1 00665 bp Feature: gene Location: 100921-101076 bp Feature: gene Location: 101343-101576 bp Feature: domain Description: ParE Location: 101352-101568 bp Feature: domain Description: ParE Location: 1 01 352-1 01 568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ParE (COG3668)

Seq: WSEY01000014.1 Photorhabdus bodei strain CN4 CN4_25_scf0014, whole genome shotgun sequence (96801 bp)
Overview 1 RT 1: 2-1601 bp Neighborhood of RT #1 [2, 1627] RVT-GII RVT-GII GIIM group_II_RT_mat Feature: gene Location: 2-130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-12 8 bp Feature: gene Location: 218-499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 45-389 bp Feature: gene Location: 508-777 bp Feature: domain Description: GIIM Note: maturase Location: 520-685 bp Feature: domain Description: GIIM Note: maturase Location: 52 0-685 bp Feature: gene Location: 1286-1627 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1445-1601 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1445-1601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: WSEY01000018.1 Photorhabdus bodei strain CN4 CN4_25_scf0018, whole genome shotgun sequence (80516 bp)
Overview 1 RT 1: 17035-22142 bp Neighborhood of RT #1 [17035, 22474] DDE_Tnp_1_6 RVT-UG12 rubredoxin_like rubredoxin_like Feature: gene Location: 17035-17910 bp Feature: domain Description: DDE_Tnp_1_6 Location: 17590-17905 bp Feature: domain Description: DDE_Tnp_1_6 Location: 17590-17905 bp Feature: gene Location: 18094-18432 bp Feature: gene Location: 18572-20254 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 18905-19355 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 18905-193 55 bp Feature: gene Location: 21056-21226 bp Feature: gene Location: 21245-22474 bp Feature: domain Description: rubredoxin_like Location: 21395-21437 bp Feature: domain Description: rubredoxin_like Location: 213 95-2143 7 bp Feature: domain Description: rubredoxin_like Location: 22100-22142 bp Feature: domain Description: rubredoxin_like Location: 22100-22142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_6 (pfam13751), RVT-UG12, rubredoxin_like (cl00202)

Seq: WSEY01000050.1 Photorhabdus bodei strain CN4 CN4_25_scf0050, whole genome shotgun sequence (36320 bp)
Overview 1 RT 1: 19148-23414 bp Neighborhood of RT #1 [19148, 23419] DDE_Tnp_1_3 RVT-GII copA copA Feature: gene Location: 19148-19327 bp Feature: gene Location: 19592-20017 bp Feature: domain Description: DDE_Tnp_1_3 Location: 19595-19907 bp Feature: domain Description: DDE_Tnp_1_3 Location: 19595-19907 bp Feature: gene Location: 20058-20249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20067-20196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20067-20196 bp Feature: gene Location: 20332-20607 bp Feature: gene Location: 20684-23419 bp Feature: domain Description: copA Location: 20687-20885 bp Feature: domain Description: copA Location: 20687-20885 bp Feature: domain Description: copA Location: 20897-23414 bp Feature: domain Description: copA Location: 20897-234 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_3 (pfam13612), RVT-GII, copA (PRK10671)

Seq: WSEY01000057.1 Photorhabdus bodei strain CN4 CN4_25_scf0057, whole genome shotgun sequence (30037 bp)
Overview 1 RT 1: 19710-24053 bp Neighborhood of RT #1 [19710, 24229] Arm-DNA-bind_3 INT_P4_C RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 19710-20147 bp Feature: domain Description: Arm-DNA-bind_3 Location: 19743-19944 bp Feature: domain Description: Arm-DNA-bind_3 Location: 19743-19944 bp Feature: gene Location: 20388-20735 bp Feature: domain Description: INT_P4_C Location: 20394-20655 bp Feature: domain Description: INT_P4_C Location: 20394-2065 5 bp Feature: gene Location: 20989-21924 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21091-21691 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21091-21691 bp Feature: gene Location: 21921-23582 bp Feature: domain Description: COG3950 Location: 22116-23541 bp Feature: domain Description: COG395 0 Location: 22116-235 41 bp Feature: gene Location: 23579-24229 bp Feature: domain Description: TIGR02646 Location: 23642-24053 bp Feature: domain Description: TIGR02646 Location: 23642-2405 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: WSEY01000074.1 Photorhabdus bodei strain CN4 CN4_25_scf0074, whole genome shotgun sequence (18441 bp)
Overview 1 RT 1: 10579-18423 bp Neighborhood of RT #1 [10579, 18440] zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C MATE_NorM_like RVT-GII Intron_maturas2 HNHc RVT-GII GIIM RVT-GII Feature: gene Location: 10579-12069 bp Feature: domain Description: zf-IS66 Location: 10873-10999 bp Feature: domain Description: zf-IS6 6 Location: 10873-10999 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11062-11905 bp Feature: domain Description: DDE_Tnp_IS6 6 Location: 1106 2-11905 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11929-12043 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 11929-12043 bp Feature: gene Location: 12360-13745 bp Feature: domain Description: MATE_NorM_like Location: 12390-13698 bp Feature: domain Description: MATE_NorM_like Location: 12390-136 98 bp Feature: gene Location: 14085-15875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14346-15138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14346 -15138 bp Feature: domain Description: Intron_maturas2 Location: 15240-15471 bp Feature: domain Description: Intron_maturas2 Location: 15240-15471 bp Feature: domain Description: HNHc Note: nucleases Location: 15642-15834 bp Feature: domain Description: HNHc Note: nucleases Location: 156 42-15834 bp Feature: gene Location: 16116-16271 bp Feature: gene Location: 16392-17801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16746-17403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 746 -17403 bp Feature: domain Description: GIIM Note: maturase Location: 17484-17703 bp Feature: domain Description: GIIM Note: maturase Location: 17484-17703 bp Feature: gene Location: 17639-18184 bp Feature: gene Location: 18189-18440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18192-18423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18192-18423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), MATE_NorM_like (cd13137), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388)

Seq: WSEY01000134.1 Photorhabdus bodei strain CN4 CN4_25_scf0134, whole genome shotgun sequence (1112 bp)
Overview 1 RT 1: 1-986 bp Neighborhood of RT #1 [1, 986] RVT-GII Feature: gene Location: 1-651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277-652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 7 -652 bp Feature: gene Location: 756-986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII