myRT

myRT report for GCA_010119695.1_ASM1011969v1

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Seq: WSEV01000005.1 Photorhabdus laumondii subsp. laumondii strain C-EN01 C_EN01_7_scf0005, whole genome shotgun sequence (141923 bp)
Overview 1 RT 1: 140207-141777 bp Neighborhood of RT #1 [140207, 141920] RVT-GII Feature: gene Location: 140207-140827 bp Feature: gene Location: 140984-141172 bp Feature: gene Location: 141231-141920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141234-141777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 234-1 41 777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WSEV01000007.1 Photorhabdus laumondii subsp. laumondii strain C-EN01 C_EN01_7_scf0007, whole genome shotgun sequence (125843 bp)
Overview 1 RT 1: 40-2502 bp Neighborhood of RT #1 [40, 2502] HTH_29 HTH_33 DDE_3 RVT-GII DDE_Tnp_Tn3 Feature: gene Location: 40-1086 bp Feature: domain Description: HTH_29 Location: 145-313 bp Feature: domain Description: HTH_2 9 Location: 145-313 bp Feature: domain Description: HTH_33 Location: 349-511 bp Feature: domain Description: HTH_33 Location: 349-511 bp Feature: domain Description: DDE_3 Location: 553-982 bp Feature: domain Description: DDE_3 Location: 553-982 bp Feature: gene Location: 1232-1612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1436-1502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1436-1502 bp Feature: gene Location: 1739-2116 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1757-2018 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1757-2 018 bp Feature: gene Location: 2044-2502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_Tn3 (pfam01526), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: WSEV01000038.1 Photorhabdus laumondii subsp. laumondii strain C-EN01 C_EN01_7_scf0038, whole genome shotgun sequence (52155 bp)
Overview 1 RT 1: 30049-32831 bp Neighborhood of RT #1 [30049, 32831] arc_metj RVT-Retrons Feature: gene Location: 30049-30306 bp Feature: domain Description: arc_metj Location: 30172-30283 bp Feature: domain Description: arc_metj Location: 3 0172-3 0283 bp Feature: gene Location: 30498-30701 bp Feature: gene Location: 30732-31913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30882-31458 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 0882-3 1458 bp Feature: gene Location: 31903-32430 bp Feature: gene Location: 32643-32831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT-Retrons

Seq: WSEV01000047.1 Photorhabdus laumondii subsp. laumondii strain C-EN01 C_EN01_7_scf0047, whole genome shotgun sequence (40826 bp)
Overview 1 RT 1: 34846-40374 bp Neighborhood of RT #1 [34846, 40374] DUF2235 DUF2235 RVT-GII Endotoxin_N Feature: gene Location: 34846-35046 bp Feature: gene Location: 35658-37220 bp Feature: domain Description: DUF2235 Location: 35733-36180 bp Feature: domain Description: DUF2235 Location: 35733-36180 bp Feature: domain Description: DUF2235 Location: 36231-36528 bp Feature: domain Description: DUF2235 Location: 36231-36528 bp Feature: gene Location: 37585-38130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37969-38050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37969-38050 bp Feature: gene Location: 38648-39901 bp Feature: domain Description: Endotoxin_N Location: 38762-39272 bp Feature: domain Description: Endotoxin_N Location: 38762-39272 bp Feature: gene Location: 39940-40374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2235 (pfam09994), RVT-GII, Endotoxin_N (pfam03945)

Seq: WSEV01000083.1 Photorhabdus laumondii subsp. laumondii strain C-EN01 C_EN01_7_scf0083, whole genome shotgun sequence (17298 bp)
Overview 1 RT 1: 1-17157 bp Neighborhood of RT #1 [1, 17174] RVT-GII RVT-GII GIIM RVT-GII FMT_core_NRPS_like FMT_C_OzmH_like PRK12467 PRK12467 PRK12467 PRK12467 PRK12467 PRK12467 EntF Feature: gene Location: 1-387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-361 bp Feature: gene Location: 571-768 bp Feature: gene Location: 765-2174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119-1776 bp Feature: domain Description: GIIM Note: maturase Location: 1857-2076 bp Feature: domain Description: GIIM Note: maturase Location: 185 7-2076 bp Feature: gene Location: 2171-2731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2243-2429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2243-2429 bp Feature: gene Location: 3297-17174 bp Feature: domain Description: FMT_core_NRPS_like Location: 3411-3906 bp Feature: domain Description: FMT_core_NRPS_like Location: 3411-3906 bp Feature: domain Description: FMT_C_OzmH_like Location: 3984-4278 bp Feature: domain Description: FMT_C_OzmH_like Location: 3984-4278 bp Feature: domain Description: PRK12467 Location: 4902-6849 bp Feature: domain Description: PRK12467 Location: 4902-6849 bp Feature: domain Description: PRK12467 Location: 6900-8157 bp Feature: domain Description: PRK12467 Location: 6900-815 7 bp Feature: domain Description: PRK12467 Location: 8190-10095 bp Feature: domain Description: PRK12467 Location: 8190-10095 bp Feature: domain Description: PRK12467 Location: 10152-13335 bp Feature: domain Description: PRK12467 Location: 1015 2-13335 bp Feature: domain Description: PRK12467 Location: 13374-14631 bp Feature: domain Description: PRK12467 Location: 13374-14631 bp Feature: domain Description: PRK12467 Location: 14697-16557 bp Feature: domain Description: PRK12467 Location: 14697-165 5 7 bp Feature: domain Description: EntF Location: 16632-17157 bp Feature: domain Description: EntF Location: 16632-1715 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FMT_core_NRPS_like (cd08649), FMT_C_OzmH_like (cd08700), PRK12467 (peptide synthase; Provisional), EntF (COG3319)

Seq: WSEV01000171.1 Photorhabdus laumondii subsp. laumondii strain C-EN01 C_EN01_7_scf0171, whole genome shotgun sequence (963 bp)
Overview 1 RT 1: 2-832 bp Neighborhood of RT #1 [2, 832] RVT-GII Feature: gene Location: 2-244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-242 bp Feature: gene Location: 361-630 bp Feature: gene Location: 695-832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII