myRT

myRT report for GCA_010119735.1_ASM1011973v1

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Seq: WSEZ01000001.1 Photorhabdus laumondii subsp. laumondii strain C-TT01 C_TT01i_1_scf0001, whole genome shotgun sequence (436192 bp)
Overview 1 RT 1: 40-2842 bp Neighborhood of RT #1 [40, 2842] HTH_29 HTH_33 DDE_3 HTH_33 DDE_3 RVT-GII DDE_Tnp_Tn3 Feature: gene Location: 40-1518 bp Feature: domain Description: HTH_29 Location: 145-313 bp Feature: domain Description: HTH_29 Location: 1 45-31 3 bp Feature: domain Description: HTH_33 Location: 349-511 bp Feature: domain Description: HTH_33 Location: 349-51 1 bp Feature: domain Description: DDE_3 Location: 553-781 bp Feature: domain Description: DDE_3 Location: 553-781 bp Feature: domain Description: HTH_33 Location: 802-943 bp Feature: domain Description: HTH_33 Location: 802-943 bp Feature: domain Description: DDE_3 Location: 985-1414 bp Feature: domain Description: DDE_3 Location: 985-1 41 4 bp Feature: gene Location: 1664-2044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-1934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 868-1 934 bp Feature: gene Location: 2171-2548 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2189-2450 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 21 89-2450 bp Feature: gene Location: 2621-2842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_Tn3 (pfam01526), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: WSEZ01000005.1 Photorhabdus laumondii subsp. laumondii strain C-TT01 C_TT01i_1_scf0005, whole genome shotgun sequence (204647 bp)
Overview 1 RT 1: 6056-9712 bp Neighborhood of RT #1 [6056, 9822] HTH_Tnp_1 RVT-GII PRK02399 Feature: gene Location: 6056-6244 bp Feature: domain Description: HTH_Tnp_1 Location: 6065-6194 bp Feature: domain Description: HTH_Tnp_1 Location: 6065-6194 bp Feature: gene Location: 6736-7005 bp Feature: gene Location: 7090-7932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7096-7789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7096-7789 bp Feature: gene Location: 8336-8956 bp Feature: gene Location: 9010-9822 bp Feature: domain Description: PRK02399 Location: 9100-9712 bp Feature: domain Description: PRK02 399 Location: 9100-9712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, PRK02399 (hypothetical protein; Provisional)

Seq: WSEZ01000006.1 Photorhabdus laumondii subsp. laumondii strain C-TT01 C_TT01i_1_scf0006, whole genome shotgun sequence (187064 bp)
Overview 1 RT 1: 87971-90753 bp Neighborhood of RT #1 [87971, 90753] arc_metj RVT-Retrons Feature: gene Location: 87971-88228 bp Feature: domain Description: arc_metj Location: 88094-88205 bp Feature: domain Description: arc_metj Location: 88094-88205 bp Feature: gene Location: 88420-88623 bp Feature: gene Location: 88654-89835 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88804-89380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88804-893 80 bp Feature: gene Location: 89825-90352 bp Feature: gene Location: 90565-90753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT-Retrons

Seq: WSEZ01000039.1 Photorhabdus laumondii subsp. laumondii strain C-TT01 C_TT01i_1_scf0039, whole genome shotgun sequence (40413 bp)
Overview 1 RT 1: 34433-39961 bp Neighborhood of RT #1 [34433, 39961] DUF2235 DUF2235 RVT-GII Endotoxin_N Feature: gene Location: 34433-34633 bp Feature: gene Location: 35245-36807 bp Feature: domain Description: DUF2235 Location: 35320-35767 bp Feature: domain Description: DUF2235 Location: 35320-35767 bp Feature: domain Description: DUF2235 Location: 35818-36115 bp Feature: domain Description: DUF2235 Location: 35818-36115 bp Feature: gene Location: 37172-37717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37556-37637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37556-37637 bp Feature: gene Location: 38235-39488 bp Feature: domain Description: Endotoxin_N Location: 38349-38859 bp Feature: domain Description: Endotoxin_N Location: 3834 9-38859 bp Feature: gene Location: 39527-39961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2235 (pfam09994), RVT-GII, Endotoxin_N (pfam03945)