myRT

myRT report for GCA_010119775.1_ASM1011977v1

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Seq: WSFB01000005.1 Photorhabdus laumondii subsp. laumondii strain IL9 IL9_35_scf0005, whole genome shotgun sequence (142166 bp)
Overview 1 RT 1: 140207-141930 bp Neighborhood of RT #1 [140207, 142073] RVT-GII Feature: gene Location: 140207-140827 bp Feature: gene Location: 140984-141172 bp Feature: gene Location: 141231-142073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141237-141930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 237-1 41 930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WSFB01000007.1 Photorhabdus laumondii subsp. laumondii strain IL9 IL9_35_scf0007, whole genome shotgun sequence (125843 bp)
Overview 1 RT 1: 40-2502 bp Neighborhood of RT #1 [40, 2502] HTH_29 HTH_33 DDE_3 RVT-GII DDE_Tnp_Tn3 Feature: gene Location: 40-1086 bp Feature: domain Description: HTH_29 Location: 145-313 bp Feature: domain Description: HTH_2 9 Location: 145-313 bp Feature: domain Description: HTH_33 Location: 349-511 bp Feature: domain Description: HTH_33 Location: 349-511 bp Feature: domain Description: DDE_3 Location: 553-982 bp Feature: domain Description: DDE_3 Location: 553-982 bp Feature: gene Location: 1232-1612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1436-1502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1436-1502 bp Feature: gene Location: 1739-2116 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1757-2018 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1757-2 018 bp Feature: gene Location: 2044-2502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_Tn3 (pfam01526), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: WSFB01000039.1 Photorhabdus laumondii subsp. laumondii strain IL9 IL9_35_scf0039, whole genome shotgun sequence (52155 bp)
Overview 1 RT 1: 30049-32831 bp Neighborhood of RT #1 [30049, 32831] arc_metj RVT-Retrons Feature: gene Location: 30049-30306 bp Feature: domain Description: arc_metj Location: 30172-30283 bp Feature: domain Description: arc_metj Location: 3 0172-3 0283 bp Feature: gene Location: 30498-30701 bp Feature: gene Location: 30732-31913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30882-31458 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 0882-3 1458 bp Feature: gene Location: 31903-32430 bp Feature: gene Location: 32643-32831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT-Retrons

Seq: WSFB01000046.1 Photorhabdus laumondii subsp. laumondii strain IL9 IL9_35_scf0046, whole genome shotgun sequence (40826 bp)
Overview 1 RT 1: 34846-40374 bp Neighborhood of RT #1 [34846, 40374] DUF2235 DUF2235 RVT-GII Endotoxin_N Feature: gene Location: 34846-35046 bp Feature: gene Location: 35658-37220 bp Feature: domain Description: DUF2235 Location: 35733-36180 bp Feature: domain Description: DUF2235 Location: 35733-36180 bp Feature: domain Description: DUF2235 Location: 36231-36528 bp Feature: domain Description: DUF2235 Location: 36231-36528 bp Feature: gene Location: 37585-38130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37969-38050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37969-38050 bp Feature: gene Location: 38648-39901 bp Feature: domain Description: Endotoxin_N Location: 38762-39272 bp Feature: domain Description: Endotoxin_N Location: 38762-39272 bp Feature: gene Location: 39940-40374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2235 (pfam09994), RVT-GII, Endotoxin_N (pfam03945)

Seq: WSFB01000083.1 Photorhabdus laumondii subsp. laumondii strain IL9 IL9_35_scf0083, whole genome shotgun sequence (18134 bp)
Overview 1 RT 1: 132-17993 bp Neighborhood of RT #1 [132, 18010] RVT-GII RVT-GII GIIM RVT-GII FMT_core_NRPS_like FMT_C_OzmH_like PRK12467 PRK12467 PRK12467 PRK12467 PRK12467 PRK12467 EntF Feature: gene Location: 132-269 bp Feature: gene Location: 334-603 bp Feature: gene Location: 720-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726-1197 bp Feature: gene Location: 1407-1604 bp Feature: gene Location: 1601-3010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1955-2612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195 5 -2612 bp Feature: domain Description: GIIM Note: maturase Location: 2693-2912 bp Feature: domain Description: GIIM Note: maturase Location: 2693-2912 bp Feature: gene Location: 3007-3567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3079-3265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3079-3265 bp Feature: gene Location: 4133-18010 bp Feature: domain Description: FMT_core_NRPS_like Location: 4247-4742 bp Feature: domain Description: FMT_core_NRPS_like Location: 4247-4742 bp Feature: domain Description: FMT_C_OzmH_like Location: 4820-5114 bp Feature: domain Description: FMT_C_OzmH_like Location: 4820-5 114 bp Feature: domain Description: PRK12467 Location: 5738-7685 bp Feature: domain Description: PRK12467 Location: 5 738-7685 bp Feature: domain Description: PRK12467 Location: 7736-8993 bp Feature: domain Description: PRK12467 Location: 7736-8993 bp Feature: domain Description: PRK12467 Location: 9026-10931 bp Feature: domain Description: PRK12467 Location: 9026-10931 bp Feature: domain Description: PRK12467 Location: 10988-14171 bp Feature: domain Description: PRK12467 Location: 10988-14171 bp Feature: domain Description: PRK12467 Location: 14210-15467 bp Feature: domain Description: PRK12467 Location: 14210-15 467 bp Feature: domain Description: PRK12467 Location: 15533-17393 bp Feature: domain Description: PRK12467 Location: 15 5 33-17393 bp Feature: domain Description: EntF Location: 17468-17993 bp Feature: domain Description: EntF Location: 17468-17993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FMT_core_NRPS_like (cd08649), FMT_C_OzmH_like (cd08700), PRK12467 (peptide synthase; Provisional), EntF (COG3319)