myRT

myRT report for GCA_010119795.1_ASM1011979v1

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Seq: WSFD01000006.1 Photorhabdus laumondii subsp. laumondii strain M-EN01 M_EN01_8_scf0006, whole genome shotgun sequence (142553 bp)
Overview 1 RT 1: 140731-142409 bp Neighborhood of RT #1 [140731, 142552] RVT-GII Feature: gene Location: 140731-141351 bp Feature: gene Location: 141508-141696 bp Feature: gene Location: 141755-142552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141758-142409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 758-1 42409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WSFD01000009.1 Photorhabdus laumondii subsp. laumondii strain M-EN01 M_EN01_8_scf0009, whole genome shotgun sequence (125843 bp)
Overview 1 RT 1: 40-2502 bp Neighborhood of RT #1 [40, 2502] HTH_29 HTH_33 DDE_3 RVT-GII DDE_Tnp_Tn3 Feature: gene Location: 40-1086 bp Feature: domain Description: HTH_29 Location: 145-313 bp Feature: domain Description: HTH_2 9 Location: 145-313 bp Feature: domain Description: HTH_33 Location: 349-511 bp Feature: domain Description: HTH_33 Location: 349-511 bp Feature: domain Description: DDE_3 Location: 553-982 bp Feature: domain Description: DDE_3 Location: 553-982 bp Feature: gene Location: 1232-1612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1436-1502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1436-1502 bp Feature: gene Location: 1739-2116 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1757-2018 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1757-2 018 bp Feature: gene Location: 2044-2502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_Tn3 (pfam01526), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: WSFD01000039.1 Photorhabdus laumondii subsp. laumondii strain M-EN01 M_EN01_8_scf0039, whole genome shotgun sequence (52155 bp)
Overview 1 RT 1: 30049-32831 bp Neighborhood of RT #1 [30049, 32831] arc_metj RVT-Retrons Feature: gene Location: 30049-30306 bp Feature: domain Description: arc_metj Location: 30172-30283 bp Feature: domain Description: arc_metj Location: 3 0172-3 0283 bp Feature: gene Location: 30498-30701 bp Feature: gene Location: 30732-31913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30882-31458 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 0882-3 1458 bp Feature: gene Location: 31903-32430 bp Feature: gene Location: 32643-32831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT-Retrons

Seq: WSFD01000047.1 Photorhabdus laumondii subsp. laumondii strain M-EN01 M_EN01_8_scf0047, whole genome shotgun sequence (40826 bp)
Overview 1 RT 1: 453-4477 bp Neighborhood of RT #1 [453, 5169] Endotoxin_N RVT-GII DUF2235 DUF2235 Feature: gene Location: 453-887 bp Feature: gene Location: 926-2179 bp Feature: domain Description: Endotoxin_N Location: 1040-1550 bp Feature: domain Description: Endotoxin_N Location: 104 0-1550 bp Feature: gene Location: 2697-3242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3081-3162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3081-3162 bp Feature: gene Location: 3471-3677 bp Feature: gene Location: 3739-5169 bp Feature: domain Description: DUF2235 Location: 3781-4129 bp Feature: domain Description: DUF2235 Location: 3781-4 129 bp Feature: domain Description: DUF2235 Location: 4180-4477 bp Feature: domain Description: DUF2235 Location: 4 180-4 4 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF2235 (pfam09994), Endotoxin_N (pfam03945)

Seq: WSFD01000083.1 Photorhabdus laumondii subsp. laumondii strain M-EN01 M_EN01_8_scf0083, whole genome shotgun sequence (17404 bp)
Overview 1 RT 1: 2-17263 bp Neighborhood of RT #1 [2, 17280] RVT-GII RVT-GII GIIM RVT-GII FMT_core_NRPS_like FMT_C_OzmH_like PRK12467 PRK12467 PRK12467 PRK12467 PRK12467 PRK12467 EntF Feature: gene Location: 2-493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 -467 bp Feature: gene Location: 677-874 bp Feature: gene Location: 871-2280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1225-1882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1225 -1882 bp Feature: domain Description: GIIM Note: maturase Location: 1963-2182 bp Feature: domain Description: GIIM Note: maturase Location: 1963-2182 bp Feature: gene Location: 2277-2837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2349-2535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2349-25 35 bp Feature: gene Location: 3403-17280 bp Feature: domain Description: FMT_core_NRPS_like Location: 3517-4012 bp Feature: domain Description: FMT_core_NRPS_like Location: 35 17-4012 bp Feature: domain Description: FMT_C_OzmH_like Location: 4090-4384 bp Feature: domain Description: FMT_C_OzmH_like Location: 4090-4384 bp Feature: domain Description: PRK12467 Location: 5008-6955 bp Feature: domain Description: PRK12467 Location: 5 008-695 5 bp Feature: domain Description: PRK12467 Location: 7006-8263 bp Feature: domain Description: PRK12467 Location: 7006-8263 bp Feature: domain Description: PRK12467 Location: 8296-10201 bp Feature: domain Description: PRK12467 Location: 8296-10201 bp Feature: domain Description: PRK12467 Location: 10258-13441 bp Feature: domain Description: PRK12467 Location: 1025 8-13441 bp Feature: domain Description: PRK12467 Location: 13480-14737 bp Feature: domain Description: PRK12467 Location: 13480-14737 bp Feature: domain Description: PRK12467 Location: 14803-16663 bp Feature: domain Description: PRK12467 Location: 14803-16663 bp Feature: domain Description: EntF Location: 16738-17263 bp Feature: domain Description: EntF Location: 16738-17263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FMT_core_NRPS_like (cd08649), FMT_C_OzmH_like (cd08700), PRK12467 (peptide synthase; Provisional), EntF (COG3319)

Seq: WSFD01000169.1 Photorhabdus laumondii subsp. laumondii strain M-EN01 M_EN01_8_scf0169, whole genome shotgun sequence (857 bp)
Overview 1 RT 1: 1-726 bp Neighborhood of RT #1 [1, 726] RVT-GII Feature: gene Location: 1-138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-136 bp Feature: gene Location: 255-524 bp Feature: gene Location: 589-726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII