myRT

myRT report for GCA_010119865.1_ASM1011986v1

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Seq: WSFG01000001.1 Photorhabdus laumondii subsp. laumondii strain M-TT01 M_TT01i_2_scf0001, whole genome shotgun sequence (517667 bp)
Overview 1 RT 1: 80604-84653 bp Neighborhood of RT #1 [80604, 84653] hsdM HTH_29 HTH_33 DDE_3 HTH_33 DDE_3 RVT-GII DDE_Tnp_Tn3 Feature: gene Location: 80604-81839 bp Feature: domain Description: hsdM Location: 80622-81813 bp Feature: domain Description: hsdM Location: 80622-81 81 3 bp Feature: gene Location: 81851-83329 bp Feature: domain Description: HTH_29 Location: 81956-82124 bp Feature: domain Description: HTH_29 Location: 81 956-821 24 bp Feature: domain Description: HTH_33 Location: 82160-82322 bp Feature: domain Description: HTH_33 Location: 821 60-82322 bp Feature: domain Description: DDE_3 Location: 82364-82592 bp Feature: domain Description: DDE_3 Location: 82364-82592 bp Feature: domain Description: HTH_33 Location: 82613-82754 bp Feature: domain Description: HTH_33 Location: 8261 3-82754 bp Feature: domain Description: DDE_3 Location: 82796-83225 bp Feature: domain Description: DDE_3 Location: 82796-83225 bp Feature: gene Location: 83475-83855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83679-83745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83679-83745 bp Feature: gene Location: 83982-84359 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 84000-84261 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 84000-84261 bp Feature: gene Location: 84432-84653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hsdM (TIGR00497), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, DDE_Tnp_Tn3 (pfam01526)

Seq: WSFG01000005.1 Photorhabdus laumondii subsp. laumondii strain M-TT01 M_TT01i_2_scf0005, whole genome shotgun sequence (203919 bp)
Overview 1 RT 1: 6056-9712 bp Neighborhood of RT #1 [6056, 9822] HTH_Tnp_1 RVT-GII PRK02399 Feature: gene Location: 6056-6244 bp Feature: domain Description: HTH_Tnp_1 Location: 6065-6194 bp Feature: domain Description: HTH_Tnp_1 Location: 6065-6194 bp Feature: gene Location: 6736-7005 bp Feature: gene Location: 7090-7932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7096-7789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7096-7789 bp Feature: gene Location: 8336-8956 bp Feature: gene Location: 9010-9822 bp Feature: domain Description: PRK02399 Location: 9100-9712 bp Feature: domain Description: PRK02 399 Location: 9100-9712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, PRK02399 (hypothetical protein; Provisional)

Seq: WSFG01000011.1 Photorhabdus laumondii subsp. laumondii strain M-TT01 M_TT01i_2_scf0011, whole genome shotgun sequence (112769 bp)
Overview 1 RT 1: 13676-16458 bp Neighborhood of RT #1 [13676, 16458] arc_metj RVT-Retrons Feature: gene Location: 13676-13933 bp Feature: domain Description: arc_metj Location: 13799-13910 bp Feature: domain Description: arc_metj Location: 13 799-13 910 bp Feature: gene Location: 14125-14328 bp Feature: gene Location: 14359-15540 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14509-15085 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14509-15085 bp Feature: gene Location: 15530-16057 bp Feature: gene Location: 16270-16458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT-Retrons

Seq: WSFG01000038.1 Photorhabdus laumondii subsp. laumondii strain M-TT01 M_TT01i_2_scf0038, whole genome shotgun sequence (40413 bp)
Overview 1 RT 1: 34433-39961 bp Neighborhood of RT #1 [34433, 39961] DUF2235 DUF2235 RVT-GII Endotoxin_N Feature: gene Location: 34433-34633 bp Feature: gene Location: 35245-36807 bp Feature: domain Description: DUF2235 Location: 35320-35767 bp Feature: domain Description: DUF2235 Location: 35320-35767 bp Feature: domain Description: DUF2235 Location: 35818-36115 bp Feature: domain Description: DUF2235 Location: 35818-36115 bp Feature: gene Location: 37172-37717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37556-37637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37556-37637 bp Feature: gene Location: 38235-39488 bp Feature: domain Description: Endotoxin_N Location: 38349-38859 bp Feature: domain Description: Endotoxin_N Location: 3834 9-38859 bp Feature: gene Location: 39527-39961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2235 (pfam09994), RVT-GII, Endotoxin_N (pfam03945)