myRT

myRT report for GCA_010179615.1_ASM1017961v1

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Seq: JAAEBY010000117.1 Escherichia coli strain EC886340 STEC11__trimmed_contig_117, whole genome shotgun sequence (16362 bp)
Overview 1 RT 1: 3-2676 bp Neighborhood of RT #1 [3, 2819] RVT-GII GIIM Methylase_S Feature: gene Location: 3-284 bp Feature: gene Location: 336-1688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 657-1275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 657-1 275 bp Feature: domain Description: GIIM Note: maturase Location: 1323-1554 bp Feature: domain Description: GIIM Note: maturase Location: 1 323-1 554 bp Feature: gene Location: 1759-2190 bp Feature: gene Location: 2199-2819 bp Feature: domain Description: Methylase_S Location: 2235-2676 bp Feature: domain Description: Methylase_S Location: 2235-2676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methylase_S (pfam01420), RVT-GII, GIIM (pfam08388)

Seq: JAAEBY010000088.1 Escherichia coli strain EC886340 STEC11__trimmed_contig_88, whole genome shotgun sequence (68203 bp)
Overview 1 RT 1: 39216-43098 bp Neighborhood of RT #1 [39216, 43103] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 39216-39674 bp Feature: domain Description: dut Location: 39222-39669 bp Feature: domain Description: dut Location: 392 2 2 -39669 bp Feature: gene Location: 39781-40377 bp Feature: domain Description: slmA Location: 39787-40363 bp Feature: domain Description: slmA Location: 39787-40363 bp Feature: gene Location: 40423-41382 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40558-41107 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40558-41107 bp Feature: gene Location: 41680-42336 bp Feature: domain Description: pyrE Location: 41698-42331 bp Feature: domain Description: pyrE Location: 41698-42 331 bp Feature: gene Location: 42387-43103 bp Feature: domain Description: rph Location: 42390-43098 bp Feature: domain Description: rph Location: 42 390-43098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)