myRT

myRT report for GCA_010179795.1_ASM1017979v1

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Seq: JAAEFJ010000020.1 Klebsiella pneumoniae strain TX001-U01 NODE_20_length_103345_cov_80.059941, whole genome shotgun sequence (103345 bp)
Overview 1 RT 1: 64502-71370 bp Neighborhood of RT #1 [64502, 71372] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 64502-65230 bp Feature: domain Description: FimC Location: 64550-65213 bp Feature: domain Description: FimC Location: 64550-6521 3 bp Feature: gene Location: 65262-67871 bp Feature: domain Description: FimD Location: 65319-67860 bp Feature: domain Description: FimD Location: 6531 9-67860 bp Feature: gene Location: 67871-69949 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 68279-68723 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 68279-68723 bp Feature: gene Location: 70006-70446 bp Feature: domain Description: Integrase_1 Location: 70012-70228 bp Feature: domain Description: Integrase_1 Location: 7001 2-70228 bp Feature: gene Location: 70707-71372 bp Feature: domain Description: INT_P4_C Location: 70812-71370 bp Feature: domain Description: INT_P4_C Location: 7081 2-71 370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: JAAEFJ010000032.1 Klebsiella pneumoniae strain TX001-U01 NODE_32_length_42657_cov_132.778088, whole genome shotgun sequence (42657 bp)
Overview 1 RT 1: 39818-42631 bp Neighborhood of RT #1 [39818, 42654] RVT-GII YjcC Feature: gene Location: 39818-40075 bp Feature: gene Location: 40146-40286 bp Feature: gene Location: 40672-40854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40780-40846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40780-40846 bp Feature: gene Location: 41386-41559 bp Feature: gene Location: 41629-42654 bp Feature: domain Description: YjcC Location: 41818-42631 bp Feature: domain Description: YjcC Location: 41818-42 631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YjcC (COG4943)

Seq: JAAEFJ010000072.1 Klebsiella pneumoniae strain TX001-U01 NODE_72_length_1895_cov_523.690319, whole genome shotgun sequence (1895 bp)
Overview 1 RT 1: 2-1445 bp Neighborhood of RT #1 [2, 1837] RVT-GII Feature: gene Location: 2-196 bp Feature: gene Location: 350-1837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755-1445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755-1445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII