myRT

myRT report for GCA_010179805.1_ASM1017980v1

Download annotations/find similar RTs

Seq: JAAEFH010000022.1 Klebsiella pneumoniae strain TX001-S01 NODE_22_length_87062_cov_40.788193, whole genome shotgun sequence (87062 bp)
Overview 1 RT 1: 31974-38827 bp Neighborhood of RT #1 [31974, 38844] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 31974-32639 bp Feature: domain Description: INT_P4_C Location: 32079-32637 bp Feature: domain Description: INT_P4_C Location: 32079-32637 bp Feature: gene Location: 32900-33340 bp Feature: domain Description: Integrase_1 Location: 32906-33122 bp Feature: domain Description: Integrase_1 Location: 32906-331 22 bp Feature: gene Location: 33397-35475 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33805-34249 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33805-34249 bp Feature: gene Location: 35475-38084 bp Feature: domain Description: FimD Location: 35532-38073 bp Feature: domain Description: FimD Location: 35532-38073 bp Feature: gene Location: 38116-38844 bp Feature: domain Description: FimC Location: 38164-38827 bp Feature: domain Description: FimC Location: 381 64-38827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: JAAEFH010000035.1 Klebsiella pneumoniae strain TX001-S01 NODE_35_length_42657_cov_78.329310, whole genome shotgun sequence (42657 bp)
Overview 1 RT 1: 39818-42631 bp Neighborhood of RT #1 [39818, 42654] RVT-GII YjcC Feature: gene Location: 39818-40075 bp Feature: gene Location: 40146-40286 bp Feature: gene Location: 40672-40854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40780-40846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40780-40846 bp Feature: gene Location: 41386-41559 bp Feature: gene Location: 41629-42654 bp Feature: domain Description: YjcC Location: 41818-42631 bp Feature: domain Description: YjcC Location: 41818-42 631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YjcC (COG4943)

Seq: JAAEFH010000074.1 Klebsiella pneumoniae strain TX001-S01 NODE_74_length_1615_cov_274.850455, whole genome shotgun sequence (1615 bp)
Overview 1 RT 1: 1-1586 bp Neighborhood of RT #1 [1, 1586] RVT-GII Feature: gene Location: 1-1410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-1093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403 -1093 bp Feature: gene Location: 1419-1586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII