myRT

myRT report for GCA_010179835.1_ASM1017983v1

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Seq: JAAEFI010000019.1 Klebsiella pneumoniae strain TX001-S05 NODE_19_length_115574_cov_46.547677, whole genome shotgun sequence (115574 bp)
Overview 1 RT 1: 107999-114867 bp Neighborhood of RT #1 [107999, 114869] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 107999-108727 bp Feature: domain Description: FimC Location: 108047-108710 bp Feature: domain Description: FimC Location: 1 08047-1 0871 0 bp Feature: gene Location: 108759-111368 bp Feature: domain Description: FimD Location: 108816-111357 bp Feature: domain Description: FimD Location: 1 0881 6-1 1 1 357 bp Feature: gene Location: 111368-113446 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 111776-112220 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 1 776-1 1 2220 bp Feature: gene Location: 113503-113943 bp Feature: domain Description: Integrase_1 Location: 113509-113725 bp Feature: domain Description: Integrase_1 Location: 1 1 3509-1 1 3725 bp Feature: gene Location: 114204-114869 bp Feature: domain Description: INT_P4_C Location: 114309-114867 bp Feature: domain Description: INT_P4_C Location: 1 1 4309-1 1 4867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: JAAEFI010000034.1 Klebsiella pneumoniae strain TX001-S05 NODE_34_length_42657_cov_48.164984, whole genome shotgun sequence (42657 bp)
Overview 1 RT 1: 1-3899 bp Neighborhood of RT #1 [1, 3901] YjcC RVT-GII COG2159 Feature: gene Location: 1-1029 bp Feature: domain Description: YjcC Location: 193-1006 bp Feature: domain Description: YjcC Location: 193-1006 bp Feature: gene Location: 1099-1272 bp Feature: gene Location: 1804-1995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1921-1987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 1-1987 bp Feature: gene Location: 2520-2744 bp Feature: gene Location: 3134-3901 bp Feature: domain Description: COG2159 Location: 3311-3899 bp Feature: domain Description: COG2 159 Location: 3311-3899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjcC (COG4943), RVT-GII, COG2159 (Predicted metal-dependent hydrolase, TIM-barrel fold )

Seq: JAAEFI010000085.1 Klebsiella pneumoniae strain TX001-S05 NODE_85_length_728_cov_224.156682, whole genome shotgun sequence (728 bp)
Overview 1 RT 1: 3-690 bp Neighborhood of RT #1 [3, 692] RVT-GII Feature: gene Location: 3-692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAEFI010000089.1 Klebsiella pneumoniae strain TX001-S05 NODE_89_length_676_cov_227.327212, whole genome shotgun sequence (676 bp)
Overview 1 RT 1: 2-359 bp Neighborhood of RT #1 [2, 673] RVT-GII Feature: gene Location: 2-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII