myRT

myRT report for GCA_010206155.1_ASM1020615v1

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Seq: VIQR01000041.1 [Clostridium] cocleatum strain I50 14_Assembly.final.scaffolds_scaffold12.1, whole genome shotgun sequence (74753 bp)
Overview 1 RT 1: 39501-43078 bp Neighborhood of RT #1 [39501, 43158] YcaP DUF3792 RVT-GII GIIM nicotinamidase_related Feature: gene Location: 39501-40133 bp Feature: domain Description: YcaP Location: 39507-40128 bp Feature: domain Description: YcaP Location: 39507-401 28 bp Feature: gene Location: 40183-40539 bp Feature: domain Description: DUF3792 Location: 40201-40510 bp Feature: domain Description: DUF3792 Location: 40201 -4051 0 bp Feature: gene Location: 40682-42025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40928-41546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40928-41 546 bp Feature: domain Description: GIIM Note: maturase Location: 41600-41810 bp Feature: domain Description: GIIM Note: maturase Location: 41 600-41 81 0 bp Feature: gene Location: 42361-42561 bp Feature: gene Location: 42631-43158 bp Feature: domain Description: nicotinamidase_related Location: 42637-43078 bp Feature: domain Description: nicotinamidase_related Location: 42637-43078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcaP (COG2323), DUF3792 (pfam12670), RVT-GII, GIIM (pfam08388), nicotinamidase_related (cd01014)

Seq: VIQR01000016.1 [Clostridium] cocleatum strain I50 14_Assembly.final.scaffolds_scaffold19.1, whole genome shotgun sequence (86116 bp)
Overview 1 RT 1: 30240-43241 bp Neighborhood of RT #1 [30240, 43318] Glyco_hydro_20b NAGidase F5_F8_type_C F5_F8_type_C F5_F8_type_C F5_F8_type_C FIVAR FIVAR FIVAR FIVAR FIVAR AfuC CE2_N FIVAR CBM6_cellulase-like CBM6_cellulase-like FIVAR FIVAR FIVAR FIVAR RVT-GII INT_RitC_C_like INT_RitC_C_like Feature: gene Location: 30240-34946 bp Feature: domain Description: Glyco_hydro_20b Location: 30369-30792 bp Feature: domain Description: Glyco_hydro_2 0b Location: 30369-30792 bp Feature: domain Description: NAGidase Location: 30810-31716 bp Feature: domain Description: NAGidase Location: 30810-31716 bp Feature: domain Description: F5_F8_type_C Location: 32244-32544 bp Feature: domain Description: F5_F8_type_C Location: 32 2 44-32 544 bp Feature: domain Description: F5_F8_type_C Location: 32652-32982 bp Feature: domain Description: F5_F8_type_C Location: 32 652 -32 982 bp Feature: domain Description: F5_F8_type_C Location: 33129-33312 bp Feature: domain Description: F5_F8_type_C Location: 3312 9-33312 bp Feature: domain Description: F5_F8_type_C Location: 33384-33609 bp Feature: domain Description: F5_F8_type_C Location: 33384-33609 bp Feature: domain Description: FIVAR Location: 33792-33927 bp Feature: domain Description: FIVAR Location: 33792 -3392 7 bp Feature: domain Description: FIVAR Location: 33957-34131 bp Feature: domain Description: FIVAR Location: 33957-34131 bp Feature: domain Description: FIVAR Location: 34167-34353 bp Feature: domain Description: FIVAR Location: 34167-34353 bp Feature: domain Description: FIVAR Location: 34380-34554 bp Feature: domain Description: FIVAR Location: 34380-34554 bp Feature: domain Description: FIVAR Location: 34584-34767 bp Feature: domain Description: FIVAR Location: 34584-34767 bp Feature: gene Location: 36458-41134 bp Feature: domain Description: AfuC Location: 36599-38030 bp Feature: domain Description: AfuC Location: 36599-38030 bp Feature: domain Description: CE2_N Location: 38177-38402 bp Feature: domain Description: CE2 _N Location: 38177-38402 bp Feature: domain Description: FIVAR Location: 38861-38981 bp Feature: domain Description: FIVAR Location: 38861-38981 bp Feature: domain Description: CBM6_cellulase-like Location: 39125-39386 bp Feature: domain Description: CBM6_cellulase-like Location: 3912 5-39386 bp Feature: domain Description: CBM6_cellulase-like Location: 39812-40079 bp Feature: domain Description: CBM6_cellulase-like Location: 39812 -40079 bp Feature: domain Description: FIVAR Location: 40163-40343 bp Feature: domain Description: FIVAR Location: 40163-40343 bp Feature: domain Description: FIVAR Location: 40373-40553 bp Feature: domain Description: FIVAR Location: 40373-40553 bp Feature: domain Description: FIVAR Location: 40631-40757 bp Feature: domain Description: FIVAR Location: 40631-40757 bp Feature: domain Description: FIVAR Location: 40787-40970 bp Feature: domain Description: FIVAR Location: 40787-40970 bp Feature: gene Location: 41729-42523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41930-42512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41930-42 512 bp Feature: gene Location: 42516-43028 bp Feature: domain Description: INT_RitC_C_like Location: 42684-43023 bp Feature: domain Description: INT_RitC_C_like Location: 42 684-4302 3 bp Feature: gene Location: 43091-43318 bp Feature: domain Description: INT_RitC_C_like Location: 43094-43241 bp Feature: domain Description: INT_RitC_C_like Location: 43094-432 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_20b (pfam02838), NAGidase (pfam07555), F5_F8_type_C (pfam00754), FIVAR (pfam07554), AfuC (COG3669), CE2_N (pfam17996), CBM6_cellulase-like (cd04080), RVT-GII, INT_RitC_C_like (cd01182)

Seq: VIQR01000023.1 [Clostridium] cocleatum strain I50 14_Assembly.final.scaffolds_scaffold33.1, whole genome shotgun sequence (20087 bp)
Overview 1 RT 1: 16381-20036 bp Neighborhood of RT #1 [16381, 20086] rplA PRK14539 RVT-GII GIIM HTH_Tnp_1 Feature: gene Location: 16381-17067 bp Feature: domain Description: rplA Location: 16387-17059 bp Feature: domain Description: rplA Location: 163 87-17059 bp Feature: gene Location: 17135-17548 bp Feature: domain Description: PRK14539 Location: 17141-17543 bp Feature: domain Description: PRK1453 9 Location: 17141-17543 bp Feature: gene Location: 17924-19222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18125-18743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18125-18743 bp Feature: domain Description: GIIM Note: maturase Location: 18797-19013 bp Feature: domain Description: GIIM Note: maturase Location: 18797-19013 bp Feature: gene Location: 19392-19577 bp Feature: gene Location: 19853-20086 bp Feature: domain Description: HTH_Tnp_1 Location: 19901-20036 bp Feature: domain Description: HTH_Tnp_1 Location: 19901-2003 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplA (PRK05424), PRK14539 (50S ribosomal protein L11/unknown domain fusion protein; Provisional), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527)

Seq: VIQR01000010.1 [Clostridium] cocleatum strain I50 14_Assembly.final.scaffolds_scaffold6.1, whole genome shotgun sequence (171737 bp)
Overview 1 RT 1: 107601-109542 bp 2 RT 2: 112084-121339 bp Neighborhood of RT #1 [107601, 109544] WYL RVT-GII Neighborhood of RT #2 [112084, 121365] Inhibitor_I9 Peptidases_S8_C5a_Peptidase fn3_5 FlgD_ig FIVAR FIVAR FIVAR FIDO RVT-GII YdcF-like Feature: gene Location: 107601-108668 bp Feature: domain Description: WYL Location: 108078-108648 bp Feature: domain Description: WYL Location: 108078-10864 8 bp Feature: gene Location: 108900-109031 bp Feature: gene Location: 109275-109544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109479-109542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094 79-10954 2 bp Feature: gene Location: 112084-116646 bp Feature: domain Description: Inhibitor_I9 Location: 112363-112567 bp Feature: domain Description: Inhibitor_I9 Location: 112363-112567 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 112717-114397 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 112717-114 397 bp Feature: domain Description: fn3_5 Location: 114469-114913 bp Feature: domain Description: fn3_5 Location: 114 4 69-114 913 bp Feature: domain Description: FlgD_ig Location: 115402-115483 bp Feature: domain Description: FlgD_ig Location: 1154 02-1154 83 bp Feature: domain Description: FIVAR Location: 115873-116053 bp Feature: domain Description: FIVAR Location: 115873-116053 bp Feature: domain Description: FIVAR Location: 116083-116257 bp Feature: domain Description: FIVAR Location: 116083-116257 bp Feature: domain Description: FIVAR Location: 116287-116470 bp Feature: domain Description: FIVAR Location: 116287-1164 70 bp Feature: gene Location: 117639-118502 bp Feature: domain Description: FIDO Location: 117876-118428 bp Feature: domain Description: FIDO Location: 117876-1184 28 bp Feature: gene Location: 119302-119547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119362-119500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119362-119500 bp Feature: gene Location: 120150-120494 bp Feature: gene Location: 120565-121365 bp Feature: domain Description: YdcF-like Location: 120907-121339 bp Feature: domain Description: YdcF-like Location: 120907-121339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WYL (pfam13280), RVT-GII, Inhibitor_I9 (pfam05922), Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), FlgD_ig (pfam13860), FIVAR (pfam07554), FIDO (COG2184), YdcF-like (cl00630)