myRT

myRT report for GCA_010206235.1_ASM1020623v1

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Seq: VIQW01000006.1 Parabacteroides goldsteinii strain MD072 9_Assembly.final.scaffolds_scaffold29.1, whole genome shotgun sequence (78609 bp)
Overview 1 RT 1: 104-2671 bp Neighborhood of RT #1 [104, 2671] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 104-1927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368-1190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368-1 1 90 bp Feature: domain Description: Intron_maturas2 Location: 1364-1607 bp Feature: domain Description: Intron_maturas2 Location: 1 364-1 607 bp Feature: domain Description: HNHc Note: nucleases Location: 1718-1889 bp Feature: domain Description: HNHc Note: nucleases Location: 1 71 8-1 889 bp Feature: gene Location: 2185-2373 bp Feature: gene Location: 2438-2671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VIQW01000042.1 Parabacteroides goldsteinii strain MD072 9_Assembly.final.scaffolds_scaffold4.1, whole genome shotgun sequence (221073 bp)
Overview 1 RT 1: 1-2820 bp Neighborhood of RT #1 [1, 2843] RVT-GII Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 1-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-1087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 65-1087 bp Feature: gene Location: 1290-1430 bp Feature: gene Location: 1827-2843 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1857-2106 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1857-2 106 bp Feature: domain Description: Phage_int_SAM_5 Location: 2154-2463 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 154-2 463 bp Feature: domain Description: INTN1_C_like Location: 2514-2820 bp Feature: domain Description: INTN1_C_like Location: 2 514-2 82 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VIQW01000066.1 Parabacteroides goldsteinii strain MD072 9_Assembly.final.scaffolds_scaffold60.1, whole genome shotgun sequence (33562 bp)
Overview 1 RT 1: 27-1760 bp Neighborhood of RT #1 [27, 1760] RVT-GII Arm-DNA-bind_5 Phage_int_SAM_5 Feature: gene Location: 27-782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30-525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0-525 bp Feature: gene Location: 857-1423 bp Feature: domain Description: Arm-DNA-bind_5 Location: 890-1142 bp Feature: domain Description: Arm-DNA-bind_5 Location: 890-1142 bp Feature: domain Description: Phage_int_SAM_5 Location: 1181-1412 bp Feature: domain Description: Phage_int_SAM_5 Location: 1181-1412 bp Feature: gene Location: 1560-1760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102)

Seq: VIQW01000089.1 Parabacteroides goldsteinii strain MD072 9_Assembly.final.scaffolds_scaffold74.1, whole genome shotgun sequence (17845 bp)
Overview 1 RT 1: 557-4918 bp Neighborhood of RT #1 [557, 4947] DUF4141 RVT_N RVT-GII GIIM Bac_Flav_CT_J Feature: gene Location: 557-832 bp Feature: gene Location: 837-995 bp Feature: domain Description: DUF4141 Location: 849-993 bp Feature: domain Description: DUF4 14 1 Location: 84 9-993 bp Feature: gene Location: 1955-3637 bp Feature: RT Description: RVT_N Location: 2009-2252 bp Feature: RT Description: RVT_N Location: 2009-2252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2297-2951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2297-2951 bp Feature: domain Description: GIIM Note: maturase Location: 3005-3236 bp Feature: domain Description: GIIM Note: maturase Location: 3005-3236 bp Feature: gene Location: 3664-3939 bp Feature: gene Location: 3943-4947 bp Feature: domain Description: Bac_Flav_CT_J Location: 3949-4918 bp Feature: domain Description: Bac_Flav_CT_J Location: 394 9-4 918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_J (TIGR03782), DUF4141 (pfam13605)

Seq: VIQW01000104.1 Parabacteroides goldsteinii strain MD072 9_Assembly.final.scaffolds_scaffold88.1, whole genome shotgun sequence (10420 bp)
Overview 1 RT 1: 7796-10418 bp Neighborhood of RT #1 [7796, 10418] RVT_N RVT-GII GIIM Feature: gene Location: 7796-8014 bp Feature: gene Location: 8093-8344 bp Feature: gene Location: 8626-10281 bp Feature: RT Description: RVT_N Location: 8683-8920 bp Feature: RT Description: RVT_N Location: 8683-8920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8971-9619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8971-9619 bp Feature: domain Description: GIIM Note: maturase Location: 9676-9907 bp Feature: domain Description: GIIM Note: maturase Location: 9676-9907 bp Feature: gene Location: 10278-10418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)