myRT

myRT report for GCA_010206365.1_ASM1020636v1

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Seq: VIRA01000068.1 Lachnospiraceae bacterium MD335 5_Assembly.final.scaffolds_scaffold1.1, whole genome shotgun sequence (160677 bp)
Overview 1 RT 1: 120135-124320 bp Neighborhood of RT #1 [120135, 124604] DUF16 RVT-DGRs pfam12571 Feature: gene Location: 120135-120443 bp Feature: domain Description: DUF16 Location: 120150-120342 bp Feature: domain Description: DUF1 6 Location: 1 201 50-1 20342 bp Feature: gene Location: 120536-120730 bp Feature: gene Location: 121074-122306 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 121371-121989 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 21 371 -1 21 989 bp Feature: gene Location: 122713-124002 bp Feature: gene Location: 124002-124604 bp Feature: domain Description: pfam12571 Location: 124026-124320 bp Feature: domain Description: pfam1 2571 Location: 1 24026-1 24320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF16 (pfam01519), RVT-DGRs, pfam12571 (DUF3751;Phage tail-collar fibre protein)

Seq: VIRA01000003.1 Lachnospiraceae bacterium MD335 5_Assembly.final.scaffolds_scaffold16.1, whole genome shotgun sequence (87674 bp)
Overview 1 RT 1: 29995-34377 bp Neighborhood of RT #1 [29995, 34550] VirD4 RVT-GII T4SS-DNA_transf Feature: gene Location: 29995-30750 bp Feature: domain Description: VirD4 Location: 30304-30685 bp Feature: domain Description: VirD4 Location: 30304-30685 bp Feature: gene Location: 31061-31384 bp Feature: gene Location: 31372-33261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31690-32434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31690-32 434 bp Feature: gene Location: 33284-33553 bp Feature: gene Location: 33432-34550 bp Feature: domain Description: T4SS-DNA_transf Location: 33444-34377 bp Feature: domain Description: T4SS-DNA_transf Location: 33444-34377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, T4SS-DNA_transf (pfam02534)

Seq: VIRA01000069.1 Lachnospiraceae bacterium MD335 5_Assembly.final.scaffolds_scaffold18.1, whole genome shotgun sequence (96429 bp)
Overview 1 RT 1: 6347-9988 bp Neighborhood of RT #1 [6347, 9988] COG4646 RVT_N RVT-GII GIIM Feature: gene Location: 6347-6790 bp Feature: domain Description: COG4646 Location: 6353-6770 bp Feature: domain Description: COG4646 Location: 63 53 -6770 bp Feature: gene Location: 7052-7255 bp Feature: gene Location: 7617-9290 bp Feature: RT Description: RVT_N Location: 7662-7905 bp Feature: RT Description: RVT_N Location: 7662-7905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7950-8598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7950-8598 bp Feature: domain Description: GIIM Note: maturase Location: 8652-8883 bp Feature: domain Description: GIIM Note: maturase Location: 8652-8883 bp Feature: gene Location: 9446-9676 bp Feature: gene Location: 9746-9988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VIRA01000128.1 Lachnospiraceae bacterium MD335 5_Assembly.final.scaffolds_scaffold32.1, whole genome shotgun sequence (57156 bp)
Overview 1 RT 1: 32127-36873 bp Neighborhood of RT #1 [32127, 36968] IHF RVT_N RVT-GII RVT-GII YhhI Feature: gene Location: 32127-34613 bp Feature: gene Location: 34691-35155 bp Feature: domain Description: IHF Location: 34835-35081 bp Feature: domain Description: IHF Location: 34 835-35081 bp Feature: gene Location: 35346-35573 bp Feature: RT Description: RVT_N Location: 35352-35466 bp Feature: RT Description: RVT_N Location: 35352-354 66 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35511-35571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35511-35571 bp Feature: gene Location: 35610-35885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35616-35880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35616-35880 bp Feature: gene Location: 35999-36733 bp Feature: gene Location: 36636-36968 bp Feature: domain Description: YhhI Location: 36729-36873 bp Feature: domain Description: YhhI Location: 36729-36873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IHF (cd13832), RVT_N (pfam13655), RVT-GII, YhhI (COG5433)

Seq: VIRA01000010.1 Lachnospiraceae bacterium MD335 5_Assembly.final.scaffolds_scaffold44.1, whole genome shotgun sequence (61463 bp)
Overview 1 RT 1: 57831-60705 bp Neighborhood of RT #1 [57831, 60722] RVT-DGRs Dam Feature: gene Location: 57831-58421 bp Feature: gene Location: 58509-58670 bp Feature: gene Location: 58729-59928 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58924-59647 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 8924-5 9647 bp Feature: gene Location: 59900-60163 bp Feature: gene Location: 60231-60722 bp Feature: domain Description: Dam Location: 60237-60705 bp Feature: domain Description: Dam Location: 60237-60705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: VIRA01000076.1 Lachnospiraceae bacterium MD335 5_Assembly.final.scaffolds_scaffold58.1, whole genome shotgun sequence (27360 bp)
Overview 1 RT 1: 2149-6499 bp Neighborhood of RT #1 [2149, 6499] MarR RVT-Retrons INT_ICEBs1_C_like Feature: gene Location: 2149-3147 bp Feature: gene Location: 3110-3448 bp Feature: domain Description: MarR Location: 3134-3341 bp Feature: domain Description: MarR Location: 3134-3341 bp Feature: gene Location: 3542-4603 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3752-4343 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3752-4343 bp Feature: gene Location: 4962-5540 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4965-5409 bp Feature: domain Description: INT_ICEBs1_C_like Location: 496 5-5409 bp Feature: gene Location: 5537-6499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), RVT-Retrons, INT_ICEBs1_C_like (cd01189)

Seq: VIRA01000108.1 Lachnospiraceae bacterium MD335 5_Assembly.final.scaffolds_scaffold83.1, whole genome shotgun sequence (12261 bp)
Overview 1 RT 1: 2238-6133 bp Neighborhood of RT #1 [2238, 6133] OmpR RVT-GII GIIM Feature: gene Location: 2238-2915 bp Feature: domain Description: OmpR Location: 2253-2907 bp Feature: domain Description: OmpR Location: 2253-2907 bp Feature: gene Location: 3124-3582 bp Feature: gene Location: 4200-5504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4455-5145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4455-5145 bp Feature: domain Description: GIIM Note: maturase Location: 5205-5430 bp Feature: domain Description: GIIM Note: maturase Location: 5205-5430 bp Feature: gene Location: 5520-5840 bp Feature: gene Location: 5864-6133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), RVT-GII, GIIM (pfam08388)