myRT

myRT report for GCA_010206385.1_ASM1020638v1

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Seq: VIRE01000135.1 Bacteroides acidifaciens strain MD185 1_Assembly.final.scaffolds_scaffold126.1, whole genome shotgun sequence (3523 bp)
Overview 1 RT 1: 264-3521 bp Neighborhood of RT #1 [264, 3521] RVT-DGRs Feature: gene Location: 264-1016 bp Feature: gene Location: 1250-1624 bp Feature: gene Location: 1634-2977 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1841-2432 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 841 -2432 bp Feature: gene Location: 3267-3521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VIRE01000063.1 Bacteroides acidifaciens strain MD185 1_Assembly.final.scaffolds_scaffold14.1, whole genome shotgun sequence (93329 bp)
Overview 1 RT 1: 62117-64923 bp Neighborhood of RT #1 [62117, 64923] PRK09741 RVT-DGRs Feature: gene Location: 62117-62548 bp Feature: domain Description: PRK09741 Location: 62204-62537 bp Feature: domain Description: PRK09741 Location: 62 2 04-62 537 bp Feature: gene Location: 62680-63225 bp Feature: gene Location: 63347-64273 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63680-64253 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63680-642 53 bp Feature: gene Location: 64326-64463 bp Feature: gene Location: 64495-64923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09741 (hypothetical protein; Provisional), RVT-DGRs

Seq: VIRE01000002.1 Bacteroides acidifaciens strain MD185 1_Assembly.final.scaffolds_scaffold18.1, whole genome shotgun sequence (78435 bp)
Overview 1 RT 1: 44709-48742 bp Neighborhood of RT #1 [44709, 48762] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Feature: gene Location: 44709-45284 bp Feature: domain Description: TraO Location: 44784-45279 bp Feature: domain Description: TraO Location: 44784-45279 bp Feature: gene Location: 45287-45994 bp Feature: domain Description: Bac_Flav_CT_N Location: 45410-45971 bp Feature: domain Description: Bac_Flav_CT_N Location: 45410-45971 bp Feature: gene Location: 45984-47795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46248-47070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46248-47070 bp Feature: domain Description: Intron_maturas2 Location: 47142-47451 bp Feature: domain Description: Intron_maturas2 Location: 47142-47451 bp Feature: gene Location: 47830-48318 bp Feature: gene Location: 48337-48762 bp Feature: domain Description: Bac_Flav_CT_N Location: 48340-48742 bp Feature: domain Description: Bac_Flav_CT_N Location: 483 40-48742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VIRE01000033.1 Bacteroides acidifaciens strain MD185 1_Assembly.final.scaffolds_scaffold23.1, whole genome shotgun sequence (67809 bp)
Overview 1 RT 1: 43256-47090 bp Neighborhood of RT #1 [43256, 47090] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 43256-43726 bp Feature: domain Description: Phage_holin_4_1 Location: 43343-43655 bp Feature: domain Description: Phage_holin_4 _1 Location: 4 334 3-4 3655 bp Feature: gene Location: 43728-44099 bp Feature: gene Location: 44077-45111 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44287-44899 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 4 287-4 4 899 bp Feature: gene Location: 45368-45712 bp Feature: gene Location: 45756-47090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: VIRE01000026.1 Bacteroides acidifaciens strain MD185 1_Assembly.final.scaffolds_scaffold25.1, whole genome shotgun sequence (62564 bp)
Overview 1 RT 1: 1315-6325 bp Neighborhood of RT #1 [1315, 6325] Cupin_2 HxlR RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 1315-1764 bp Feature: domain Description: Cupin_2 Location: 1483-1690 bp Feature: domain Description: Cupin_2 Location: 1483-1690 bp Feature: gene Location: 1949-2332 bp Feature: domain Description: HxlR Location: 1970-2312 bp Feature: domain Description: HxlR Location: 1970-2312 bp Feature: gene Location: 2474-3766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684-3341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684-3341 bp Feature: domain Description: GIIM Note: maturase Location: 3419-3626 bp Feature: domain Description: GIIM Note: maturase Location: 3419-3626 bp Feature: gene Location: 4183-4320 bp Feature: gene Location: 4345-5613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4558-5215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 5 8-5 215 bp Feature: domain Description: GIIM Note: maturase Location: 5296-5503 bp Feature: domain Description: GIIM Note: maturase Location: 5 296-5 5 03 bp Feature: gene Location: 5790-6128 bp Feature: gene Location: 6176-6325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_2 (pfam07883), HxlR (pfam01638), RVT-GII, GIIM (pfam08388)

Seq: VIRE01000044.1 Bacteroides acidifaciens strain MD185 1_Assembly.final.scaffolds_scaffold29.1, whole genome shotgun sequence (52160 bp)
Overview 1 RT 1: 48770-51911 bp Neighborhood of RT #1 [48770, 51911] CcmA RVT-GII Feature: gene Location: 48770-49600 bp Feature: gene Location: 49607-50506 bp Feature: domain Description: CcmA Location: 49664-50414 bp Feature: domain Description: CcmA Location: 496 6 4-50414 bp Feature: gene Location: 50640-51431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50685-51300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506 85-51300 bp Feature: gene Location: 51780-51911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), RVT-GII

Seq: VIRE01000094.1 Bacteroides acidifaciens strain MD185 1_Assembly.final.scaffolds_scaffold36.1, whole genome shotgun sequence (38792 bp)
Overview 1 RT 1: 1607-11953 bp Neighborhood of RT #1 [1607, 11958] GIIM RVT-GII PRK00566 rpoB Feature: gene Location: 1607-1837 bp Feature: domain Description: GIIM Note: maturase Location: 1703-1832 bp Feature: domain Description: GIIM Note: maturase Location: 17 03-1832 bp Feature: gene Location: 2173-2319 bp Feature: gene Location: 2388-3281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2712-3276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 12-327 6 bp Feature: gene Location: 3757-8040 bp Feature: domain Description: PRK00566 Location: 3778-7999 bp Feature: domain Description: PRK00566 Location: 37 7 8-7 999 bp Feature: gene Location: 8146-11958 bp Feature: domain Description: rpoB Location: 8167-11953 bp Feature: domain Description: rpoB Location: 8167 -11953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), rpoB (TIGR02013)

Seq: VIRE01000085.1 Bacteroides acidifaciens strain MD185 1_Assembly.final.scaffolds_scaffold7.1, whole genome shotgun sequence (126129 bp)
Overview 1 RT 1: 44534-48066 bp Neighborhood of RT #1 [44534, 48066] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 44534-45343 bp Feature: domain Description: DUF1566 Location: 45065-45314 bp Feature: domain Description: DUF1566 Location: 45065-45314 bp Feature: gene Location: 45490-45897 bp Feature: domain Description: Avd_like Location: 45523-45832 bp Feature: domain Description: Avd_like Location: 45523-458 32 bp Feature: gene Location: 45912-47333 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46287-46989 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4628 7-4698 9 bp Feature: gene Location: 47296-47574 bp Feature: gene Location: 47773-48066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: VIRE01000123.1 Bacteroides acidifaciens strain MD185 1_Assembly.final.scaffolds_scaffold9.1, whole genome shotgun sequence (116186 bp)
Overview 1 RT 1: 104251-112460 bp Neighborhood of RT #1 [104251, 112460] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 104251-109659 bp Feature: domain Description: DUF1566 Location: 109387-109645 bp Feature: domain Description: DUF1566 Location: 109 387-109 645 bp Feature: gene Location: 109701-110057 bp Feature: domain Description: Avd_like Location: 109728-110037 bp Feature: domain Description: Avd_like Location: 109 728-110037 bp Feature: gene Location: 110065-111477 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 110455-111157 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 110455-111157 bp Feature: gene Location: 111696-112067 bp Feature: gene Location: 112113-112460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs