myRT

myRT report for GCA_010206415.1_ASM1020641v1

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Seq: VIRD01000060.1 Bacteroides caecimuris strain MD237 2_Assembly.final.scaffolds_scaffold2.1, whole genome shotgun sequence (232927 bp)
Overview 1 RT 1: 221157-224634 bp Neighborhood of RT #1 [221157, 224634] RVT_N RVT-GII Feature: gene Location: 221157-221570 bp Feature: gene Location: 221618-221944 bp Feature: gene Location: 222574-223887 bp Feature: domain Description: RVT_N Location: 222634-222877 bp Feature: domain Description: RVT_N Location: 222634-222877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222922-223570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222922-223570 bp Feature: gene Location: 223920-224219 bp Feature: gene Location: 224449-224634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: VIRD01000059.1 Bacteroides caecimuris strain MD237 2_Assembly.final.scaffolds_scaffold24.1, whole genome shotgun sequence (117267 bp)
Overview 1 RT 1: 39606-45231 bp 2 RT 2: 48951-51884 bp Neighborhood of RT #1 [39606, 45587] dnaG RVT-UG24 DEDD_Tnp_IS110 DEDD_Tnp_IS110 Neighborhood of RT #2 [48951, 51884] Cupin_2 HxlR RVT-GII RVT-GII GIIM RVT-GII Feature: gene Location: 39606-40643 bp Feature: domain Description: dnaG Location: 39696-40614 bp Feature: domain Description: dnaG Location: 39696-40614 bp Feature: gene Location: 40648-41382 bp Feature: gene Location: 41372-44488 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 41885-42347 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 41885-42 347 bp Feature: gene Location: 44501-44728 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 44525-44702 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4452 5-44702 bp Feature: gene Location: 44778-45587 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 44802-45231 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 44802 -452 31 bp Feature: gene Location: 48951-49400 bp Feature: domain Description: Cupin_2 Location: 49119-49326 bp Feature: domain Description: Cupin_2 Location: 49119-4932 6 bp Feature: gene Location: 49585-49968 bp Feature: domain Description: HxlR Location: 49606-49948 bp Feature: domain Description: HxlR Location: 49606-49948 bp Feature: gene Location: 50078-50806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50096-50195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50096-50195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50201-50408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502 01-50408 bp Feature: domain Description: GIIM Note: maturase Location: 50489-50696 bp Feature: domain Description: GIIM Note: maturase Location: 50489-50696 bp Feature: gene Location: 50760-51173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50958-51144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50958-51144 bp Feature: gene Location: 51349-51687 bp Feature: gene Location: 51735-51884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, DEDD_Tnp_IS110 (pfam01548), Cupin_2 (pfam07883), HxlR (pfam01638), RVT-GII, GIIM (pfam08388)

Seq: VIRD01000011.1 Bacteroides caecimuris strain MD237 2_Assembly.final.scaffolds_scaffold27.1, whole genome shotgun sequence (61530 bp)
Overview 1 RT 1: 7852-12192 bp Neighborhood of RT #1 [7852, 12287] SGSH Glyco_hydro_88 RVT-GII ABC_cobalt_CbiO_domain1 AAA_15 Feature: gene Location: 7852-8865 bp Feature: domain Description: SGSH Location: 7858-8761 bp Feature: domain Description: SGSH Location: 7858-8761 bp Feature: gene Location: 8888-10006 bp Feature: domain Description: Glyco_hydro_88 Location: 9080-9995 bp Feature: domain Description: Glyco_hydro_88 Location: 9080-9995 bp Feature: gene Location: 10457-10792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10733-10787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1073 3 -10787 bp Feature: gene Location: 10911-11099 bp Feature: gene Location: 11424-12287 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 11514-11625 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 11514-11625 bp Feature: domain Description: AAA_15 Location: 11811-12192 bp Feature: domain Description: AAA_15 Location: 11811-12192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SGSH (cd16027), Glyco_hydro_88 (pfam07470), RVT-GII, ABC_cobalt_CbiO_domain1 (cd03225), AAA_15 (pfam13175)

Seq: VIRD01000056.1 Bacteroides caecimuris strain MD237 2_Assembly.final.scaffolds_scaffold3.1, whole genome shotgun sequence (201958 bp)
Overview 1 RT 1: 135371-142446 bp Neighborhood of RT #1 [135371, 142985] DUF4326 TraG-D_C RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM YWFCY Feature: gene Location: 135371-135904 bp Feature: domain Description: DUF4326 Location: 135386-135641 bp Feature: domain Description: DUF4 326 Location: 135386-13564 1 bp Feature: gene Location: 136122-137348 bp Feature: domain Description: TraG-D_C Location: 136704-137037 bp Feature: domain Description: TraG-D_C Location: 136704 -137037 bp Feature: gene Location: 137353-139005 bp Feature: domain Description: RVT_N Location: 137407-137650 bp Feature: domain Description: RVT_N Location: 1374 07-137650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137695-138343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137695-13834 3 bp Feature: domain Description: GIIM Note: maturase Location: 138397-138628 bp Feature: domain Description: GIIM Note: maturase Location: 138397-138628 bp Feature: gene Location: 139171-139305 bp Feature: gene Location: 139323-139472 bp Feature: gene Location: 139643-139963 bp Feature: gene Location: 139944-141647 bp Feature: domain Description: RVT_N Location: 140016-140253 bp Feature: domain Description: RVT_N Location: 14 0016-14 0253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140304-140958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 0304 -14 0958 bp Feature: domain Description: GIIM Note: maturase Location: 141009-141243 bp Feature: domain Description: GIIM Note: maturase Location: 14 1009-14 124 3 bp Feature: gene Location: 141879-142106 bp Feature: gene Location: 142263-142985 bp Feature: domain Description: YWFCY Location: 142269-142446 bp Feature: domain Description: YWFCY Location: 14 2269-14 24 4 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4326 (pfam14216), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293)

Seq: VIRD01000025.1 Bacteroides caecimuris strain MD237 2_Assembly.final.scaffolds_scaffold32.1, whole genome shotgun sequence (55516 bp)
Overview 1 RT 1: 35360-43838 bp Neighborhood of RT #1 [35360, 43906] INT_RitA_C_like COG4646 RVT_N RVT-GII GIIM PRK13351 Feature: gene Location: 35360-36571 bp Feature: domain Description: INT_RitA_C_like Location: 35993-36527 bp Feature: domain Description: INT_RitA_C_like Location: 35 993-365 27 bp Feature: gene Location: 36815-37732 bp Feature: domain Description: COG4646 Location: 36848-37349 bp Feature: domain Description: COG4646 Location: 36848-37349 bp Feature: gene Location: 38389-40056 bp Feature: domain Description: RVT_N Location: 38443-38686 bp Feature: domain Description: RVT_N Location: 38443-38686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38731-39379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38731-39379 bp Feature: domain Description: GIIM Note: maturase Location: 39433-39664 bp Feature: domain Description: GIIM Note: maturase Location: 39433-39664 bp Feature: gene Location: 40010-41323 bp Feature: gene Location: 41981-43906 bp Feature: domain Description: PRK13351 Location: 41984-43838 bp Feature: domain Description: PRK1335 1 Location: 41984-43838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK13351 (elongation factor G-like protein)

Seq: VIRD01000014.1 Bacteroides caecimuris strain MD237 2_Assembly.final.scaffolds_scaffold4.1, whole genome shotgun sequence (172537 bp)
Overview 1 RT 1: 56745-68337 bp Neighborhood of RT #1 [56745, 68465] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 56745-56891 bp Feature: gene Location: 56975-59164 bp Feature: gene Location: 59370-60500 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59691-60234 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 596 91-6 0234 bp Feature: gene Location: 60537-66569 bp Feature: domain Description: DUF4011 Location: 61767-62280 bp Feature: domain Description: DUF4011 Location: 6 176 7-6 2280 bp Feature: domain Description: DEXXQc_SF1 Location: 62619-63048 bp Feature: domain Description: DEXXQc_SF1 Location: 6 26 19-6 3048 bp Feature: domain Description: DEXXQc_SF1 Location: 64047-64806 bp Feature: domain Description: DEXXQc_SF1 Location: 6 4047-6 4806 bp Feature: domain Description: TIGR00376 Location: 64935-65325 bp Feature: domain Description: TIGR00376 Location: 6 4935-6 5325 bp Feature: domain Description: MTES_1575 Location: 65478-65763 bp Feature: domain Description: MTES_1575 Location: 6 5478-6 576 3 bp Feature: domain Description: DUF3320 Location: 66084-66219 bp Feature: domain Description: DUF3320 Location: 6 6 084-6 6 219 bp Feature: gene Location: 66666-68465 bp Feature: domain Description: rpsA Location: 66735-68337 bp Feature: domain Description: rpsA Location: 6 6 735-6 8337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: VIRD01000022.1 Bacteroides caecimuris strain MD237 2_Assembly.final.scaffolds_scaffold60.1, whole genome shotgun sequence (11687 bp)
Overview 1 RT 1: 7005-11621 bp Neighborhood of RT #1 [7005, 11686] YWFCY RVT_N RVT-GII GIIM TraG-D_C AlbA_2 Feature: gene Location: 7005-7727 bp Feature: domain Description: YWFCY Location: 7011-7188 bp Feature: domain Description: YWFCY Location: 7 011-7 188 bp Feature: gene Location: 7957-8274 bp Feature: gene Location: 8348-10003 bp Feature: domain Description: RVT_N Location: 8402-8645 bp Feature: domain Description: RVT_N Location: 8402-8645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8690-9335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8690-9335 bp Feature: domain Description: GIIM Note: maturase Location: 9386-9620 bp Feature: domain Description: GIIM Note: maturase Location: 9386-9620 bp Feature: gene Location: 10000-11400 bp Feature: domain Description: TraG-D_C Location: 10774-11107 bp Feature: domain Description: TraG-D_C Location: 107 7 4-11107 bp Feature: gene Location: 11453-11686 bp Feature: domain Description: AlbA_2 Location: 11468-11621 bp Feature: domain Description: AlbA_2 Location: 11468-11621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), AlbA_2 (pfam04326)

Seq: VIRD01000064.1 Bacteroides caecimuris strain MD237 2_Assembly.final.scaffolds_scaffold8.1, whole genome shotgun sequence (145184 bp)
Overview 1 RT 1: 57757-61406 bp Neighborhood of RT #1 [57757, 61406] RVT-DGRs Feature: gene Location: 57757-58137 bp Feature: gene Location: 58134-58562 bp Feature: gene Location: 58525-59712 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58858-59485 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58 8 58 -5948 5 bp Feature: gene Location: 59834-59971 bp Feature: gene Location: 60045-61406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VIRD01000071.1 Bacteroides caecimuris strain MD237 2_Assembly.final.scaffolds_scaffold9.1, whole genome shotgun sequence (141705 bp)
Overview 1 RT 1: 27091-30968 bp 2 RT 2: 139321-141391 bp Neighborhood of RT #1 [27091, 30973] DUF3791 RVT-GII GIIM TIGR00043 SpmA SpmB Neighborhood of RT #2 [139321, 141702] RVT_N RVT-GII GIIM Feature: gene Location: 27091-27306 bp Feature: domain Description: DUF3791 Location: 27115-27292 bp Feature: domain Description: DUF379 1 Location: 27115-2729 2 bp Feature: gene Location: 27435-27563 bp Feature: gene Location: 27732-29138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28074-28692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28074-2869 2 bp Feature: domain Description: GIIM Note: maturase Location: 28749-28977 bp Feature: domain Description: GIIM Note: maturase Location: 28749 -289 77 bp Feature: gene Location: 29305-29724 bp Feature: domain Description: TIGR00043 Location: 29416-29713 bp Feature: domain Description: TIGR00043 Location: 29 416-29 713 bp Feature: gene Location: 29741-30973 bp Feature: domain Description: SpmA Location: 29750-30350 bp Feature: domain Description: SpmA Location: 29 750-30350 bp Feature: domain Description: SpmB Location: 30485-30968 bp Feature: domain Description: SpmB Location: 30485-309 68 bp Feature: gene Location: 139321-139476 bp Feature: gene Location: 139633-139860 bp Feature: gene Location: 140092-141702 bp Feature: domain Description: RVT_N Location: 140164-140401 bp Feature: domain Description: RVT_N Location: 140164-140401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140452-141106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140452-141106 bp Feature: domain Description: GIIM Note: maturase Location: 141157-141391 bp Feature: domain Description: GIIM Note: maturase Location: 141157-14139 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3791 (pfam12668), RVT-GII, GIIM (pfam08388), TIGR00043 (rRNA maturation RNase YbeY), SpmA (COG2715), SpmB (COG0700), RVT_N (pfam13655)