myRT

myRT report for GCA_010279825.1_ASM1027982v1

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Seq: WBSK01000117.1 Myxococcus sp. CA027 NODE_178_length_25500_cov_34.8374_ID_48700, whole genome shotgun sequence (25500 bp)
Overview 1 RT 1: 46-3242 bp Neighborhood of RT #1 [46, 3400] RVT-GII GIIM COG3617 P63C Feature: gene Location: 46-1356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 -949 bp Feature: domain Description: GIIM Note: maturase Location: 1021-1243 bp Feature: domain Description: GIIM Note: maturase Location: 1 021 -1 243 bp Feature: gene Location: 1867-2181 bp Feature: gene Location: 2624-3400 bp Feature: domain Description: COG3617 Location: 2630-2933 bp Feature: domain Description: COG361 7 Location: 2630-2933 bp Feature: domain Description: P63C Location: 2975-3242 bp Feature: domain Description: P63C Location: 2975-3242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3617 (Prophage antirepressor ), P63C (pfam10546), RVT-GII, GIIM (pfam08388)

Seq: WBSK01000002.1 Myxococcus sp. CA027 NODE_2_length_180316_cov_30.8268_ID_48338, whole genome shotgun sequence (180316 bp)
Overview 1 RT 1: 56513-69300 bp Neighborhood of RT #1 [56513, 69320] WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons DAP2 BetA BetA BetA Feature: gene Location: 56513-63049 bp Feature: domain Description: WD40 Location: 56672-57368 bp Feature: domain Description: WD40 Location: 56672 -57368 bp Feature: domain Description: HEAT_2 Location: 57590-57773 bp Feature: domain Description: HEAT_2 Location: 57590-57773 bp Feature: domain Description: HEAT_2 Location: 58355-58604 bp Feature: domain Description: HEAT_2 Location: 58355-58604 bp Feature: domain Description: HEAT_2 Location: 58649-58814 bp Feature: domain Description: HEAT_2 Location: 58649-58814 bp Feature: domain Description: HEAT_2 Location: 58844-59075 bp Feature: domain Description: HEAT_2 Location: 58844-59075 bp Feature: domain Description: HEAT_2 Location: 59513-59666 bp Feature: domain Description: HEAT_2 Location: 59513-59666 bp Feature: domain Description: HEAT_2 Location: 59774-59936 bp Feature: domain Description: HEAT_2 Location: 59774-59936 bp Feature: domain Description: HEAT_2 Location: 60296-60485 bp Feature: domain Description: HEAT_2 Location: 602 96-60485 bp Feature: domain Description: HEAT_2 Location: 60530-60737 bp Feature: domain Description: HEAT_2 Location: 60530-60737 bp Feature: domain Description: HEAT_2 Location: 60902-61136 bp Feature: domain Description: HEAT_2 Location: 60902 -61136 bp Feature: domain Description: HEAT_2 Location: 61199-61358 bp Feature: domain Description: HEAT_2 Location: 61199-61358 bp Feature: domain Description: HEAT_2 Location: 61748-61964 bp Feature: domain Description: HEAT_2 Location: 61748-61964 bp Feature: domain Description: HEAT_2 Location: 62477-62696 bp Feature: domain Description: HEAT_2 Location: 62 477-62 696 bp Feature: domain Description: HEAT_2 Location: 62822-62960 bp Feature: domain Description: HEAT_2 Location: 62 82 2 -62 960 bp Feature: gene Location: 63046-64899 bp Feature: gene Location: 65300-66757 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65858-66500 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65858-66500 bp Feature: gene Location: 66761-67651 bp Feature: domain Description: DAP2 Location: 66887-67466 bp Feature: domain Description: DAP2 Location: 66887-67466 bp Feature: gene Location: 67797-69320 bp Feature: domain Description: BetA Location: 67812-68307 bp Feature: domain Description: BetA Location: 67812 -68307 bp Feature: domain Description: BetA Location: 68448-68751 bp Feature: domain Description: BetA Location: 68448-68751 bp Feature: domain Description: BetA Location: 68886-69300 bp Feature: domain Description: BetA Location: 68886-69300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), HEAT_2 (pfam13646), RVT-Retrons, DAP2 (COG1506), BetA (COG2303)

Seq: WBSK01000186.1 Myxococcus sp. CA027 NODE_338_length_8717_cov_30.7639_ID_49030, whole genome shotgun sequence (8717 bp)
Overview 1 RT 1: 3060-7575 bp Neighborhood of RT #1 [3060, 8003] RNase_HI_like RVT-Retrons COG4941 LPAM_1 Feature: gene Location: 3060-3698 bp Feature: domain Description: RNase_HI_like Location: 3309-3687 bp Feature: domain Description: RNase_HI_like Location: 3 3 09-3 687 bp Feature: gene Location: 3728-3946 bp Feature: gene Location: 4048-5376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4492-5146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4492-5146 bp Feature: gene Location: 5745-6941 bp Feature: domain Description: COG4941 Location: 5751-6921 bp Feature: domain Description: COG4941 Location: 5751-6921 bp Feature: gene Location: 7335-8003 bp Feature: domain Description: LPAM_1 Location: 7524-7575 bp Feature: domain Description: LPAM_1 Location: 7524-7575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_HI_like (cd09279), RVT-Retrons, COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), LPAM_1 (pfam08139)

Seq: WBSK01000064.1 Myxococcus sp. CA027 NODE_86_length_48588_cov_31.6656_ID_48510, whole genome shotgun sequence (48588 bp)
Overview 1 RT 1: 11965-18833 bp Neighborhood of RT #1 [11965, 19012] RVT-Retrons COG3791 EpmB Feature: gene Location: 11965-13830 bp Feature: gene Location: 13827-15425 bp Feature: gene Location: 15604-16887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16069-16672 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16069-16672 bp Feature: gene Location: 16896-17315 bp Feature: domain Description: COG3791 Location: 16920-17277 bp Feature: domain Description: COG3791 Location: 16920-17277 bp Feature: gene Location: 17684-19012 bp Feature: domain Description: EpmB Location: 17747-18833 bp Feature: domain Description: EpmB Location: 1774 7-18833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3791 (Uncharacterized conserved protein ), EpmB (COG1509)