myRT

myRT report for GCA_010374845.1_ASM1037484v1

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Seq: VLSX01000028.1 Klebsiella pneumoniae strain ATCC 4354 CGIOFEFJ_17, whole genome shotgun sequence (112119 bp)
Overview 1 RT 1: 67601-74446 bp Neighborhood of RT #1 [67601, 74703] AAA_15 RVT-Retrons Nuc_deoxyrib_tr HTH_23 Feature: gene Location: 67601-67906 bp Feature: gene Location: 68789-71065 bp Feature: domain Description: AAA_15 Location: 68822-69830 bp Feature: domain Description: AAA_1 5 Location: 68822-69830 bp Feature: gene Location: 71180-72280 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71360-71894 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71 360-71 894 bp Feature: gene Location: 72936-74054 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 73707-73878 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 73707-73878 bp Feature: gene Location: 74227-74703 bp Feature: domain Description: HTH_23 Location: 74305-74446 bp Feature: domain Description: HTH_23 Location: 74305-74446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_23 (pfam13384)

Seq: VLSX01000042.1 Klebsiella pneumoniae strain ATCC 4354 CGIOFEFJ_3, whole genome shotgun sequence (309792 bp)
Overview 1 RT 1: 46715-53884 bp Neighborhood of RT #1 [46715, 53901] EAL RVT-UG4 FimD FimC Feature: gene Location: 46715-46921 bp Feature: gene Location: 47011-47865 bp Feature: domain Description: EAL Location: 47695-47848 bp Feature: domain Description: EAL Location: 47695-47848 bp Feature: gene Location: 48502-50532 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 48910-49354 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 48910-49354 bp Feature: gene Location: 50532-53141 bp Feature: domain Description: FimD Location: 50589-53130 bp Feature: domain Description: FimD Location: 50589-53130 bp Feature: gene Location: 53173-53901 bp Feature: domain Description: FimC Location: 53221-53884 bp Feature: domain Description: FimC Location: 532 2 1-53884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EAL (smart00052), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: VLSX01000052.1 Klebsiella pneumoniae strain ATCC 4354 CGIOFEFJ_47, whole genome shotgun sequence (1913 bp)
Overview 1 RT 1: 2-1463 bp Neighborhood of RT #1 [2, 1855] RVT-GII Feature: gene Location: 2-238 bp Feature: gene Location: 371-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773 -1463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII