myRT

myRT report for GCA_010374885.1_ASM1037488v1

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Seq: VLSZ01000032.1 Klebsiella pneumoniae strain ATCC 4352 NJNGHCGK_16, whole genome shotgun sequence (138421 bp)
Overview 1 RT 1: 93903-100748 bp Neighborhood of RT #1 [93903, 101005] AAA_15 RVT-Retrons Nuc_deoxyrib_tr HTH_23 Feature: gene Location: 93903-94208 bp Feature: gene Location: 95091-97367 bp Feature: domain Description: AAA_15 Location: 95124-96132 bp Feature: domain Description: AAA_1 5 Location: 951 24-961 32 bp Feature: gene Location: 97482-98582 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97662-98196 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97662-981 96 bp Feature: gene Location: 99238-100356 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 100009-100180 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 00009-1 001 80 bp Feature: gene Location: 100529-101005 bp Feature: domain Description: HTH_23 Location: 100607-100748 bp Feature: domain Description: HTH_23 Location: 1 00607-1 00748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_23 (pfam13384)

Seq: VLSZ01000047.1 Klebsiella pneumoniae strain ATCC 4352 NJNGHCGK_3, whole genome shotgun sequence (308526 bp)
Overview 1 RT 1: 45449-52618 bp Neighborhood of RT #1 [45449, 52635] EAL RVT-UG4 FimD FimC Feature: gene Location: 45449-45655 bp Feature: gene Location: 45745-46599 bp Feature: domain Description: EAL Location: 46429-46582 bp Feature: domain Description: EAL Location: 4642 9-46582 bp Feature: gene Location: 47236-49266 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 47644-48088 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 47644-48088 bp Feature: gene Location: 49266-51875 bp Feature: domain Description: FimD Location: 49323-51864 bp Feature: domain Description: FimD Location: 4932 3-51864 bp Feature: gene Location: 51907-52635 bp Feature: domain Description: FimC Location: 51955-52618 bp Feature: domain Description: FimC Location: 51955-52 618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EAL (smart00052), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: VLSZ01000054.1 Klebsiella pneumoniae strain ATCC 4352 NJNGHCGK_46, whole genome shotgun sequence (1913 bp)
Overview 1 RT 1: 2-1463 bp Neighborhood of RT #1 [2, 1855] RVT-GII Feature: gene Location: 2-238 bp Feature: gene Location: 371-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773 -1463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII