myRT

myRT report for GCA_010499545.1_ASM1049954v1

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Seq: JAAGRP010000106.1 Desulfobacter hydrogenophilus strain DSM 3380 NODE_106_length_3826_cov_98.4312, whole genome shotgun sequence (3826 bp)
Overview 1 RT 1: 214-3711 bp Neighborhood of RT #1 [214, 3737] RVT-UG28 FIDO Feature: gene Location: 214-393 bp Feature: gene Location: 494-628 bp Feature: gene Location: 819-2315 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 1107-1743 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 1 1 07-1 743 bp Feature: gene Location: 2479-2808 bp Feature: gene Location: 3441-3737 bp Feature: domain Description: FIDO Location: 3447-3711 bp Feature: domain Description: FIDO Location: 3447-371 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28, FIDO (COG2184)

Seq: JAAGRP010000109.1 Desulfobacter hydrogenophilus strain DSM 3380 NODE_109_length_3306_cov_57.0742, whole genome shotgun sequence (3306 bp)
Overview 1 RT 1: 158-1797 bp Neighborhood of RT #1 [158, 2798] RVT-UG3 RVT-UG8 Feature: gene Location: 158-862 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 164-431 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 164-431 bp Feature: gene Location: 855-2798 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1350-1797 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1350-1797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, RVT-UG8

Seq: JAAGRP010000119.1 Desulfobacter hydrogenophilus strain DSM 3380 NODE_119_length_2465_cov_112.108, whole genome shotgun sequence (2465 bp)
Overview 1 RT 1: 174-1921 bp Neighborhood of RT #1 [174, 2061] RVT-GII YafD Feature: gene Location: 174-533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282-516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282-516 bp Feature: gene Location: 707-853 bp Feature: gene Location: 958-2061 bp Feature: domain Description: YafD Location: 1003-1921 bp Feature: domain Description: YafD Location: 1003 -1921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YafD (COG3021)

Seq: JAAGRP010000126.1 Desulfobacter hydrogenophilus strain DSM 3380 NODE_126_length_1973_cov_222.112, whole genome shotgun sequence (1973 bp)
Overview 1 RT 1: 82-1884 bp Neighborhood of RT #1 [82, 1884] RVT-GII GIIM Feature: gene Location: 82-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502-1117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502-1117 bp Feature: domain Description: GIIM Note: maturase Location: 1165-1366 bp Feature: domain Description: GIIM Note: maturase Location: 1165-1366 bp Feature: gene Location: 1657-1884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAGRP010000051.1 Desulfobacter hydrogenophilus strain DSM 3380 NODE_51_length_36021_cov_102.553, whole genome shotgun sequence (36021 bp)
Overview 1 RT 1: 270-5214 bp Neighborhood of RT #1 [270, 5303] RVT-CRISPR Cas1_I-II-III iSH2_PIK3R3 Feature: gene Location: 270-2567 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 480-1101 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 480-1101 bp Feature: domain Description: Cas1_I-II-III Location: 1566-2532 bp Feature: domain Description: Cas1_I-II-III Location: 15 66-25 32 bp Feature: gene Location: 3028-3285 bp Feature: gene Location: 4353-5303 bp Feature: domain Description: iSH2_PIK3R3 Location: 5031-5214 bp Feature: domain Description: iSH2_PIK3R3 Location: 5 031-5 214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), iSH2_PIK3R3 (cd12925)

Seq: JAAGRP010000056.1 Desulfobacter hydrogenophilus strain DSM 3380 NODE_56_length_30312_cov_98.5211, whole genome shotgun sequence (30312 bp)
Overview 1 RT 1: 28169-30311 bp Neighborhood of RT #1 [28169, 30311] Avd_like RVT-DGRs Feature: gene Location: 28169-28516 bp Feature: domain Description: Avd_like Location: 28199-28505 bp Feature: domain Description: Avd_like Location: 28199-28505 bp Feature: gene Location: 28646-28882 bp Feature: gene Location: 29032-30081 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29242-29854 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29242-29854 bp Feature: gene Location: 30168-30311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs