myRT

myRT report for GCA_010500755.1_ASM1050075v1

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Seq: JAAEAM010000012.1 Burkholderia cenocepacia strain MS-2140 Contig_12, whole genome shotgun sequence (185826 bp)
Overview 1 RT 1: 175108-178509 bp Neighborhood of RT #1 [175108, 178661] DUF1566 Avd_like RVT-DGRs ASCH_yqfb_like ASCH_yqfb_like Feature: gene Location: 175108-175572 bp Feature: domain Description: DUF1566 Location: 175369-175549 bp Feature: domain Description: DUF1 566 Location: 1 75369-1 75549 bp Feature: gene Location: 175587-175943 bp Feature: domain Description: Avd_like Location: 175614-175920 bp Feature: domain Description: Avd_like Location: 1 7561 4-1 75920 bp Feature: gene Location: 176011-177294 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 176380-177067 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 76380-1 77067 bp Feature: gene Location: 177505-177981 bp Feature: gene Location: 177978-178661 bp Feature: domain Description: ASCH_yqfb_like Location: 177996-178080 bp Feature: domain Description: ASCH_yqfb_like Location: 1 77996-1 78080 bp Feature: domain Description: ASCH_yqfb_like Location: 178419-178509 bp Feature: domain Description: ASCH_yqfb_like Location: 1 7841 9-1 78509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, ASCH_yqfb_like (cd06552)

Seq: JAAEAM010000014.1 Burkholderia cenocepacia strain MS-2140 Contig_14, whole genome shotgun sequence (177925 bp)
Overview 1 RT 1: 16311-22863 bp Neighborhood of RT #1 [16311, 22868] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 PRK08133 Feature: gene Location: 16311-17357 bp Feature: domain Description: Gmd Location: 16326-17343 bp Feature: domain Description: Gmd Location: 1632 6-17343 bp Feature: gene Location: 17419-18309 bp Feature: domain Description: GDP_MD_SDR_e Location: 17422-18277 bp Feature: domain Description: GDP_MD_SDR_e Location: 1742 2 -182 77 bp Feature: gene Location: 18429-19718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18684-19299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18684-192 99 bp Feature: domain Description: GIIM Note: maturase Location: 19359-19560 bp Feature: domain Description: GIIM Note: maturase Location: 19359-19560 bp Feature: gene Location: 19967-21001 bp Feature: domain Description: COG3547 Location: 19982-20945 bp Feature: domain Description: COG3547 Location: 19982 -2 0945 bp Feature: gene Location: 21678-22868 bp Feature: domain Description: PRK08133 Location: 21684-22863 bp Feature: domain Description: PRK08133 Location: 2 1684-2 2 863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), PRK08133 (O-succinylhomoserine sulfhydrylase; Validated)

Seq: JAAEAM010000016.1 Burkholderia cenocepacia strain MS-2140 Contig_16, whole genome shotgun sequence (167024 bp)
Overview 1 RT 1: 5084-8655 bp Neighborhood of RT #1 [5084, 8655] Avd_like RVT-DGRs Feature: gene Location: 5084-5548 bp Feature: gene Location: 5563-5952 bp Feature: domain Description: Avd_like Location: 5590-5896 bp Feature: domain Description: Avd_like Location: 5590-5896 bp Feature: gene Location: 5987-7279 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6377-7064 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63 77-7064 bp Feature: gene Location: 8014-8298 bp Feature: gene Location: 8317-8655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: JAAEAM010000003.1 Burkholderia cenocepacia strain MS-2140 Contig_3, whole genome shotgun sequence (253196 bp)
Overview 1 RT 1: 106277-111644 bp Neighborhood of RT #1 [106277, 111649] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 106277-107512 bp Feature: domain Description: MFS_MucK Location: 106355-107489 bp Feature: domain Description: MFS_MucK Location: 106355-1074 89 bp Feature: gene Location: 107829-108158 bp Feature: domain Description: Histone_HNS Location: 107850-108087 bp Feature: domain Description: Histone_HNS Location: 107850-108087 bp Feature: gene Location: 108484-109944 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109060-109696 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109060-109696 bp Feature: gene Location: 110087-110659 bp Feature: domain Description: FIN Location: 110273-110624 bp Feature: domain Description: FIN Location: 110273-110624 bp Feature: gene Location: 110894-111649 bp Feature: domain Description: his_ut_repres Location: 110972-111644 bp Feature: domain Description: his_ut_repres Location: 110972-11164 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: JAAEAM010000054.1 Burkholderia cenocepacia strain MS-2140 Contig_54, whole genome shotgun sequence (46167 bp)
Overview 1 RT 1: 38069-42137 bp Neighborhood of RT #1 [38069, 42137] COG4544 RVT-GII SRAP Feature: gene Location: 38069-38785 bp Feature: domain Description: COG4544 Location: 38162-38609 bp Feature: domain Description: COG45 44 Location: 38162-38609 bp Feature: gene Location: 38886-39542 bp Feature: gene Location: 39054-40718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39597-40287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395 97-40287 bp Feature: gene Location: 40774-41736 bp Feature: domain Description: SRAP Location: 41212-41704 bp Feature: domain Description: SRAP Location: 41212-41704 bp Feature: gene Location: 41967-42137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4544 (Uncharacterized conserved protein ), RVT-GII, SRAP (pfam02586)

Seq: JAAEAM010000072.1 Burkholderia cenocepacia strain MS-2140 Contig_72, whole genome shotgun sequence (11897 bp)
Overview 1 RT 1: 5021-8235 bp Neighborhood of RT #1 [5021, 8235] Avd_like RVT-DGRs HNH_3 Feature: gene Location: 5021-5485 bp Feature: gene Location: 5500-5889 bp Feature: domain Description: Avd_like Location: 5527-5833 bp Feature: domain Description: Avd_like Location: 5527-5833 bp Feature: gene Location: 5870-7216 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6314-7001 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 314-7001 bp Feature: gene Location: 7229-7954 bp Feature: domain Description: HNH_3 Location: 7697-7763 bp Feature: domain Description: HNH_3 Location: 76 97-776 3 bp Feature: gene Location: 7951-8235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, HNH_3 (pfam13392)