myRT

myRT report for GCA_010500955.1_ASM1050095v1

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Seq: QVMJ01000001.1 Bacteroides sp. 519 scaffold1_size564214, whole genome shotgun sequence (564214 bp)
Overview 1 RT 1: 166788-172365 bp 2 RT 2: 475791-480092 bp Neighborhood of RT #1 [166788, 172484] RVT-GII GIIM HU-HIG COG0610 Neighborhood of RT #2 [475791, 480092] MutS_I Avd_like RVT-DGRs DUF1566 Feature: gene Location: 166788-166925 bp Feature: gene Location: 166949-167089 bp Feature: gene Location: 167203-168480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167404-168016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67404-1 6801 6 bp Feature: domain Description: GIIM Note: maturase Location: 168079-168307 bp Feature: domain Description: GIIM Note: maturase Location: 1 68079-1 68307 bp Feature: gene Location: 168550-169170 bp Feature: domain Description: HU-HIG Location: 168553-168913 bp Feature: domain Description: HU-HIG Location: 1 68553-1 6891 3 bp Feature: gene Location: 169515-172484 bp Feature: domain Description: COG0610 Location: 169527-172365 bp Feature: domain Description: COG061 0 Location: 1 69527-1 72365 bp Feature: gene Location: 475791-476246 bp Feature: domain Description: MutS_I Location: 475827-476016 bp Feature: domain Description: MutS_I Location: 475827-47601 6 bp Feature: gene Location: 476272-476610 bp Feature: domain Description: Avd_like Location: 476299-476602 bp Feature: domain Description: Avd_like Location: 476299-476602 bp Feature: gene Location: 476899-478173 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 477097-477844 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 477097-477844 bp Feature: gene Location: 478185-478772 bp Feature: domain Description: DUF1566 Location: 478488-478761 bp Feature: domain Description: DUF1 566 Location: 478488-478761 bp Feature: gene Location: 479697-480092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HU-HIG (pfam18291), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), MutS_I (pfam01624), Avd_like (cd16376), RVT-DGRs, DUF1566 (pfam07603)

Seq: QVMJ01000005.1 Bacteroides sp. 519 scaffold5_size297838, whole genome shotgun sequence (297838 bp)
Overview 1 RT 1: 12036-20649 bp Neighborhood of RT #1 [12036, 20649] COG3292 COG3292 Y_Y_Y BaeS PRK15347 YesN OMP_RagA_SusC RVT-GII GIIM HTH_XRE Feature: gene Location: 12036-16052 bp Feature: domain Description: COG3292 Location: 12126-12849 bp Feature: domain Description: COG32 92 Location: 12 12 6-12 849 bp Feature: domain Description: COG3292 Location: 12867-13659 bp Feature: domain Description: COG32 92 Location: 12 867-13659 bp Feature: domain Description: Y_Y_Y Location: 14139-14301 bp Feature: domain Description: Y_Y_Y Location: 14139-14301 bp Feature: domain Description: BaeS Location: 14427-15162 bp Feature: domain Description: BaeS Location: 1442 7-15162 bp Feature: domain Description: PRK15347 Location: 15207-15627 bp Feature: domain Description: PRK15347 Location: 152 07-1562 7 bp Feature: domain Description: YesN Location: 15723-16035 bp Feature: domain Description: YesN Location: 1572 3-16035 bp Feature: gene Location: 16557-18374 bp Feature: domain Description: OMP_RagA_SusC Location: 16659-18345 bp Feature: domain Description: OMP_RagA_SusC Location: 16659-18345 bp Feature: gene Location: 18374-19549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18536-19169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18536-19169 bp Feature: domain Description: GIIM Note: maturase Location: 19250-19460 bp Feature: domain Description: GIIM Note: maturase Location: 192 50-19460 bp Feature: gene Location: 19798-20121 bp Feature: domain Description: HTH_XRE Location: 19951-20089 bp Feature: domain Description: HTH_XRE Location: 19951-2 0089 bp Feature: gene Location: 20125-20649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3292 (Periplasmic ligand-binding sensor domain ), Y_Y_Y (pfam07495), BaeS (COG0642), PRK15347 (two component system sensor kinase), YesN (COG4753), OMP_RagA_SusC (TIGR04056), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: QVMJ01000061.1 Bacteroides sp. 519 scaffold61_size2444, whole genome shotgun sequence (2444 bp)
Overview 1 RT 1: 650-1937 bp Neighborhood of RT #1 [650, 2317] RVT_N RVT-GII GIIM Feature: gene Location: 650-2317 bp Feature: RT Description: RVT_N Location: 716-959 bp Feature: RT Description: RVT_N Location: 716-959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1652 bp Feature: domain Description: GIIM Note: maturase Location: 1706-1937 bp Feature: domain Description: GIIM Note: maturase Location: 1706-193 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QVMJ01000063.1 Bacteroides sp. 519 scaffold63_size1994, whole genome shotgun sequence (1994 bp)
Overview 1 RT 1: 67-1992 bp Neighborhood of RT #1 [67, 1992] RVT-GII GIIM Feature: gene Location: 67-1362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262-877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262-877 bp Feature: domain Description: GIIM Note: maturase Location: 952-1162 bp Feature: domain Description: GIIM Note: maturase Location: 952-1162 bp Feature: gene Location: 1670-1813 bp Feature: gene Location: 1861-1992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QVMJ01000008.1 Bacteroides sp. 519 scaffold8_size100217, whole genome shotgun sequence (100217 bp)
Overview 1 RT 1: 75561-84914 bp Neighborhood of RT #1 [75561, 84961] WGR_DNA_ligase RVT-Retrons AAA-ATPase_like PDDEXK_9 Rhomboid Feature: gene Location: 75561-77216 bp Feature: gene Location: 77219-80554 bp Feature: domain Description: WGR_DNA_ligase Location: 77237-77453 bp Feature: domain Description: WGR_DNA_ligase Location: 77237-7745 3 bp Feature: gene Location: 80573-82135 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81113-81731 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81113-81731 bp Feature: gene Location: 82557-84119 bp Feature: domain Description: AAA-ATPase_like Location: 82587-83409 bp Feature: domain Description: AAA-ATPase_like Location: 825 87-83409 bp Feature: domain Description: PDDEXK_9 Location: 83832-84105 bp Feature: domain Description: PDDEXK_9 Location: 83832-84105 bp Feature: gene Location: 84362-84961 bp Feature: domain Description: Rhomboid Location: 84464-84914 bp Feature: domain Description: Rhomboid Location: 84464-84914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), RVT-Retrons, AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), Rhomboid (pfam01694)