myRT

myRT report for GCA_010500965.1_ASM1050096v1

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Seq: QVMI01000010.1 Bacteroides sp. 51 scaffold10_size117379, whole genome shotgun sequence (117379 bp)
Overview 1 RT 1: 28917-32612 bp Neighborhood of RT #1 [28917, 32833] RVT-GII GIIM EmrE cNMP_binding Feature: gene Location: 28917-29999 bp Feature: gene Location: 30539-30727 bp Feature: gene Location: 30778-31386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30787-31003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30787-31 003 bp Feature: domain Description: GIIM Note: maturase Location: 31084-31312 bp Feature: domain Description: GIIM Note: maturase Location: 31 084-31 31 2 bp Feature: gene Location: 31737-32063 bp Feature: domain Description: EmrE Location: 31740-32058 bp Feature: domain Description: EmrE Location: 31 740-32058 bp Feature: gene Location: 32270-32833 bp Feature: domain Description: cNMP_binding Location: 32354-32612 bp Feature: domain Description: cNMP_binding Location: 32354-3261 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), EmrE (pfam13536), cNMP_binding (pfam00027)

Seq: QVMI01000011.1 Bacteroides sp. 51 scaffold11_size218775, whole genome shotgun sequence (218775 bp)
Overview 1 RT 1: 5098-12185 bp Neighborhood of RT #1 [5098, 12202] DUF4906 BACON Fib_succ_major RVT-GII GIIM AAA-ATPase_like PDDEXK_9 Feature: gene Location: 5098-8241 bp Feature: domain Description: DUF4906 Location: 5518-6124 bp Feature: domain Description: DUF4906 Location: 5518-612 4 bp Feature: domain Description: BACON Location: 6274-6553 bp Feature: domain Description: BACON Location: 62 74-6553 bp Feature: domain Description: Fib_succ_major Location: 7486-8236 bp Feature: domain Description: Fib_succ_major Location: 7486-82 36 bp Feature: gene Location: 8476-8625 bp Feature: gene Location: 8801-10048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9017-9686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9017-9686 bp Feature: domain Description: GIIM Note: maturase Location: 9770-9965 bp Feature: domain Description: GIIM Note: maturase Location: 9770-9965 bp Feature: gene Location: 10118-10360 bp Feature: gene Location: 10640-12202 bp Feature: domain Description: AAA-ATPase_like Location: 10667-11492 bp Feature: domain Description: AAA-ATPase_like Location: 10667-11492 bp Feature: domain Description: PDDEXK_9 Location: 11915-12185 bp Feature: domain Description: PDDEXK_9 Location: 11915-12 185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4906 (pfam16249), BACON (pfam13004), Fib_succ_major (TIGR02145), RVT-GII, GIIM (pfam08388), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)

Seq: QVMI01000017.1 Bacteroides sp. 51 scaffold17_size198828, whole genome shotgun sequence (198828 bp)
Overview 1 RT 1: 106034-110105 bp Neighborhood of RT #1 [106034, 110119] RVT-GII GIIM COG3547 YciH_like Feature: gene Location: 106034-106210 bp Feature: gene Location: 106300-106506 bp Feature: gene Location: 106898-108238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107114-107783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107114-107783 bp Feature: domain Description: GIIM Note: maturase Location: 107867-108089 bp Feature: domain Description: GIIM Note: maturase Location: 107867-108089 bp Feature: gene Location: 108349-109428 bp Feature: domain Description: COG3547 Location: 108544-109387 bp Feature: domain Description: COG3 547 Location: 108544-1093 87 bp Feature: gene Location: 109772-110119 bp Feature: domain Description: YciH_like Location: 109886-110105 bp Feature: domain Description: YciH_like Location: 109886-110105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), YciH_like (cd11567)

Seq: QVMI01000214.1 Bacteroides sp. 51 scaffold228_size299, whole genome shotgun sequence (299 bp)
Overview 1 RT 1: 3-255 bp Neighborhood of RT #1 [3, 296] RVT-GII Feature: gene Location: 3-296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51-255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51-255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QVMI01000036.1 Bacteroides sp. 51 scaffold36_size98366, whole genome shotgun sequence (98366 bp)
Overview 1 RT 1: 93335-97780 bp Neighborhood of RT #1 [93335, 97791] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF3876 Feature: gene Location: 93335-94321 bp Feature: domain Description: Bac_Flav_CT_J Location: 93341-94298 bp Feature: domain Description: Bac_Flav_CT_J Location: 93341-94298 bp Feature: gene Location: 94343-94882 bp Feature: gene Location: 94875-97037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95496-96318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 496-96318 bp Feature: domain Description: Intron_maturas2 Location: 96477-96867 bp Feature: domain Description: Intron_maturas2 Location: 96477-96867 bp Feature: domain Description: HNHc Note: nucleases Location: 96870-97014 bp Feature: domain Description: HNHc Note: nucleases Location: 96870-97014 bp Feature: gene Location: 97116-97415 bp Feature: gene Location: 97489-97791 bp Feature: domain Description: DUF3876 Location: 97534-97780 bp Feature: domain Description: DUF3876 Location: 975 34-97780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992)

Seq: QVMI01000072.1 Bacteroides sp. 51 scaffold72_size2488, whole genome shotgun sequence (2488 bp)
Overview 1 RT 1: 118-2487 bp Neighborhood of RT #1 [118, 2487] RVT_N RVT-GII GIIM Feature: gene Location: 118-1821 bp Feature: domain Description: RVT_N Location: 187-430 bp Feature: domain Description: RVT_N Location: 187-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-1135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-1135 bp Feature: domain Description: GIIM Note: maturase Location: 1189-1423 bp Feature: domain Description: GIIM Note: maturase Location: 1189-1423 bp Feature: gene Location: 1830-2069 bp Feature: gene Location: 2293-2487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QVMI01000073.1 Bacteroides sp. 51 scaffold73_size2419, whole genome shotgun sequence (2419 bp)
Overview 1 RT 1: 127-1921 bp Neighborhood of RT #1 [127, 2301] RVT_N RVT-GII GIIM Feature: gene Location: 127-369 bp Feature: gene Location: 640-2301 bp Feature: domain Description: RVT_N Location: 697-940 bp Feature: domain Description: RVT_N Location: 697 -940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1633 bp Feature: domain Description: GIIM Note: maturase Location: 1687-1921 bp Feature: domain Description: GIIM Note: maturase Location: 1687 -1921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QVMI01000077.1 Bacteroides sp. 51 scaffold77_size1918, whole genome shotgun sequence (1918 bp)
Overview 1 RT 1: 3-1642 bp Neighborhood of RT #1 [3, 1642] RVT-GII Feature: gene Location: 3-182 bp Feature: gene Location: 420-1385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 759-1377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 759-1377 bp Feature: gene Location: 1490-1642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII