myRT

myRT report for GCA_010500995.1_ASM1050099v1

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Seq: QVMK01000021.1 Bacteroides sp. 224 scaffold21_size46106, whole genome shotgun sequence (46106 bp)
Overview 1 RT 1: 2767-11299 bp Neighborhood of RT #1 [2767, 11337] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc COG4646 HELICc HTH_17 Feature: gene Location: 2767-5808 bp Feature: domain Description: N6_Mtase Location: 3055-3706 bp Feature: domain Description: N6_Mtase Location: 3055-3706 bp Feature: domain Description: COG4646 Location: 4738-5797 bp Feature: domain Description: COG4646 Location: 4738-5797 bp Feature: gene Location: 5971-6351 bp Feature: gene Location: 6358-8163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6622-7444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6622-7444 bp Feature: domain Description: Intron_maturas2 Location: 7513-7828 bp Feature: domain Description: Intron_maturas2 Location: 751 3-7828 bp Feature: domain Description: HNHc Note: nucleases Location: 7990-8134 bp Feature: domain Description: HNHc Note: nucleases Location: 7990-81 34 bp Feature: gene Location: 8147-10942 bp Feature: domain Description: COG4646 Location: 8261-9230 bp Feature: domain Description: COG4646 Location: 8261 -9230 bp Feature: domain Description: HELICc Location: 9434-9818 bp Feature: domain Description: HELICc Location: 9434-981 8 bp Feature: gene Location: 11029-11337 bp Feature: domain Description: HTH_17 Location: 11152-11299 bp Feature: domain Description: HTH_1 7 Location: 1 1 1 52-1 1 299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HELICc (smart00490)

Seq: QVMK01000026.1 Bacteroides sp. 224 scaffold26_size87312, whole genome shotgun sequence (87312 bp)
Overview 1 RT 1: 58619-62843 bp Neighborhood of RT #1 [58619, 62848] bPH_2 NlpD RVT-GII GIIM DUF3872 TraO Feature: gene Location: 58619-59071 bp Feature: domain Description: bPH_2 Location: 58847-59021 bp Feature: domain Description: bPH_2 Location: 58847-5902 1 bp Feature: gene Location: 59138-59716 bp Feature: domain Description: NlpD Location: 59318-59672 bp Feature: domain Description: NlpD Location: 59318-59672 bp Feature: gene Location: 59838-61229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60168-60786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60168-60786 bp Feature: domain Description: GIIM Note: maturase Location: 60840-61071 bp Feature: domain Description: GIIM Note: maturase Location: 60840-61071 bp Feature: gene Location: 61801-62250 bp Feature: domain Description: DUF3872 Location: 61831-62206 bp Feature: domain Description: DUF3872 Location: 61831-62 2 06 bp Feature: gene Location: 62264-62848 bp Feature: domain Description: TraO Location: 62342-62843 bp Feature: domain Description: TraO Location: 62 342 -62 843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bPH_2 (pfam03703), NlpD (COG0739), RVT-GII, GIIM (pfam08388), DUF3872 (pfam12988), TraO (pfam10626)

Seq: QVMK01000002.1 Bacteroides sp. 224 scaffold2_size320567, whole genome shotgun sequence (320567 bp)
Overview 1 RT 1: 49587-64678 bp Neighborhood of RT #1 [49587, 64678] RVT-DGRs Laminin_G_3 CotH Feature: gene Location: 49587-53114 bp Feature: gene Location: 53390-53869 bp Feature: gene Location: 53878-55179 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54094-54685 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54094-54685 bp Feature: gene Location: 55612-62265 bp Feature: domain Description: Laminin_G_3 Location: 57811-58234 bp Feature: domain Description: Laminin_G_3 Location: 57811-5823 4 bp Feature: domain Description: CotH Location: 59191-59581 bp Feature: domain Description: CotH Location: 59191-59581 bp Feature: gene Location: 62258-64678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757)

Seq: QVMK01000034.1 Bacteroides sp. 224 scaffold34_size107517, whole genome shotgun sequence (107517 bp)
Overview 1 RT 1: 1845-5004 bp Neighborhood of RT #1 [1845, 5015] PDDEXK_2 RVT-DGRs Avd_like Feature: gene Location: 1845-2132 bp Feature: domain Description: PDDEXK_2 Location: 1863-2115 bp Feature: domain Description: PDDEXK_2 Location: 1863-2115 bp Feature: gene Location: 2517-2783 bp Feature: gene Location: 3005-4183 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3206-3935 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3206-3935 bp Feature: gene Location: 4162-4392 bp Feature: gene Location: 4671-5015 bp Feature: domain Description: Avd_like Location: 4698-5004 bp Feature: domain Description: Avd_like Location: 4 698-5004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-DGRs, Avd_like (cd16376)

Seq: QVMK01000035.1 Bacteroides sp. 224 scaffold35_size33264, whole genome shotgun sequence (33264 bp)
Overview 1 RT 1: 5142-10535 bp 2 RT 2: 26369-29612 bp Neighborhood of RT #1 [5142, 10535] PHA01623 A3DFK9-like_SDR_c RVT-GII GIIM RVT-GII GIIM A3DFK9-like_SDR_c Neighborhood of RT #2 [26369, 29632] DUF4133 DUF4134 RVT-GII Intron_maturas2 DUF4134 Feature: gene Location: 5142-5399 bp Feature: domain Description: PHA01623 Location: 5247-5394 bp Feature: domain Description: PHA01623 Location: 5 247-5 394 bp Feature: gene Location: 5403-5864 bp Feature: domain Description: A3DFK9-like_SDR_c Location: 5409-5844 bp Feature: domain Description: A3DFK9-like_SDR_c Location: 5 409-5 844 bp Feature: gene Location: 5982-7250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6195-6849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6195 -6849 bp Feature: domain Description: GIIM Note: maturase Location: 6939-7140 bp Feature: domain Description: GIIM Note: maturase Location: 6939-7140 bp Feature: gene Location: 7815-9218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8157-8775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815 7-8775 bp Feature: domain Description: GIIM Note: maturase Location: 8829-9051 bp Feature: domain Description: GIIM Note: maturase Location: 8829-905 1 bp Feature: gene Location: 9497-10018 bp Feature: domain Description: A3DFK9-like_SDR_c Location: 9683-9983 bp Feature: domain Description: A3DFK9-like_SDR_c Location: 9683-9983 bp Feature: gene Location: 10371-10535 bp Feature: gene Location: 26369-26674 bp Feature: domain Description: DUF4133 Location: 26420-26594 bp Feature: domain Description: DUF4133 Location: 26420-265 94 bp Feature: gene Location: 26681-26911 bp Feature: domain Description: DUF4134 Location: 26804-26897 bp Feature: domain Description: DUF4134 Location: 26804-26897 bp Feature: gene Location: 26908-28704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27172-27994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27172-27994 bp Feature: domain Description: Intron_maturas2 Location: 28087-28372 bp Feature: domain Description: Intron_maturas2 Location: 28087-28372 bp Feature: gene Location: 28701-29315 bp Feature: gene Location: 29351-29632 bp Feature: domain Description: DUF4134 Location: 29411-29612 bp Feature: domain Description: DUF4134 Location: 29411-29612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA01623 (hypothetical protein), A3DFK9-like_SDR_c (cd09761), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), DUF4134 (pfam13572), Intron_maturas2 (pfam01348)

Seq: QVMK01000075.1 Bacteroides sp. 224 scaffold75_size2491, whole genome shotgun sequence (2491 bp)
Overview 1 RT 1: 304-2051 bp Neighborhood of RT #1 [304, 2374] RVT-GII Intron_maturas2 Feature: gene Location: 304-456 bp Feature: gene Location: 572-2374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836-1658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836 -16 58 bp Feature: domain Description: Intron_maturas2 Location: 1814-2051 bp Feature: domain Description: Intron_maturas2 Location: 1814-2051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)