myRT

myRT report for GCA_010501055.1_ASM1050105v1

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Seq: QVMO01000163.1 Dysgonomonas sp. 521 scaffold164_size4469, whole genome shotgun sequence (4469 bp)
Overview 1 RT 1: 687-4467 bp Neighborhood of RT #1 [687, 4467] DUF1566 DUF1566 RVT-DGRs TlpA_like_family Feature: gene Location: 687-1037 bp Feature: domain Description: DUF1566 Location: 900-1032 bp Feature: domain Description: DUF1 566 Location: 900-1 032 bp Feature: gene Location: 1214-1519 bp Feature: domain Description: DUF1566 Location: 1382-1514 bp Feature: domain Description: DUF1 566 Location: 1 382-1 51 4 bp Feature: gene Location: 1592-2854 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1844-2543 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 844-2543 bp Feature: gene Location: 2862-4169 bp Feature: domain Description: TlpA_like_family Location: 3849-4125 bp Feature: domain Description: TlpA_like_family Location: 3849-41 25 bp Feature: gene Location: 4240-4467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, TlpA_like_family (cd02966)

Seq: QVMO01000193.1 Dysgonomonas sp. 521 scaffold194_size2546, whole genome shotgun sequence (2546 bp)
Overview 1 RT 1: 119-1904 bp Neighborhood of RT #1 [119, 1933] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 119-1933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383-1205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383-12 05 bp Feature: domain Description: Intron_maturas2 Location: 1340-1583 bp Feature: domain Description: Intron_maturas2 Location: 1340-1583 bp Feature: domain Description: HNHc Note: nucleases Location: 1754-1904 bp Feature: domain Description: HNHc Note: nucleases Location: 1754-1904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QVMO01000001.1 Dysgonomonas sp. 521 scaffold1_size133758, whole genome shotgun sequence (133758 bp)
Overview 1 RT 1: 102543-107380 bp Neighborhood of RT #1 [102543, 107403] Avd_like Fib_succ_major RVT-DGRs Thioredoxin_8 RteC Feature: gene Location: 102543-102887 bp Feature: domain Description: Avd_like Location: 102570-102879 bp Feature: domain Description: Avd_like Location: 102570-102879 bp Feature: gene Location: 102995-103387 bp Feature: domain Description: Fib_succ_major Location: 103100-103307 bp Feature: domain Description: Fib_succ_major Location: 103 100-103 3 07 bp Feature: gene Location: 103410-104582 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 103572-104286 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 103 572-104286 bp Feature: gene Location: 104582-105898 bp Feature: domain Description: Thioredoxin_8 Location: 105584-105851 bp Feature: domain Description: Thioredoxin_8 Location: 105584-105851 bp Feature: gene Location: 106540-107403 bp Feature: domain Description: RteC Location: 106735-107380 bp Feature: domain Description: RteC Location: 10673 5-1073 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), Fib_succ_major (TIGR02145), RVT-DGRs, Thioredoxin_8 (pfam13905), RteC (pfam09357)

Seq: QVMO01000199.1 Dysgonomonas sp. 521 scaffold200_size1913, whole genome shotgun sequence (1913 bp)
Overview 1 RT 1: 3-1821 bp Neighborhood of RT #1 [3, 1821] RVT-GII Feature: gene Location: 3-182 bp Feature: gene Location: 415-1380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754-1372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754 -1372 bp Feature: gene Location: 1540-1821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QVMO01000237.1 Dysgonomonas sp. 521 scaffold238_size602, whole genome shotgun sequence (602 bp)
Overview 1 RT 1: 1-601 bp Neighborhood of RT #1 [1, 600] RVT-GII GIIM Feature: gene Location: 1-600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-412 bp Feature: domain Description: GIIM Note: maturase Location: 466-601 bp Feature: domain Description: GIIM Note: maturase Location: 466-601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QVMO01000002.1 Dysgonomonas sp. 521 scaffold2_size188640, whole genome shotgun sequence (188640 bp)
Overview 1 RT 1: 39221-42196 bp Neighborhood of RT #1 [39221, 42196] ERF RVT-DGRs Feature: gene Location: 39221-39883 bp Feature: domain Description: ERF Location: 39320-39710 bp Feature: domain Description: ERF Location: 39320-39710 bp Feature: gene Location: 39906-40040 bp Feature: gene Location: 40087-41235 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40432-41017 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40432-41017 bp Feature: gene Location: 41312-41707 bp Feature: gene Location: 41738-42196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ERF (pfam04404), RVT-DGRs

Seq: QVMO01000034.1 Dysgonomonas sp. 521 scaffold34_size92057, whole genome shotgun sequence (92057 bp)
Overview 1 RT 1: 66492-71666 bp 2 RT 2: 77187-84762 bp Neighborhood of RT #1 [66492, 71683] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #2 [77187, 84762] YWFCY RVT_N RVT-GII RVT-GII GIIM RVT-GII GIIM TraG-D_C Feature: gene Location: 66492-66662 bp Feature: gene Location: 66674-67378 bp Feature: domain Description: Bac_Flav_CT_G Location: 66800-67370 bp Feature: domain Description: Bac_Flav_CT_G Location: 66800-67 37 0 bp Feature: gene Location: 67362-69173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67626-68448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67 626-68448 bp Feature: domain Description: Intron_maturas2 Location: 68547-68868 bp Feature: domain Description: Intron_maturas2 Location: 68547 -68868 bp Feature: domain Description: HNHc Note: nucleases Location: 69000-69144 bp Feature: domain Description: HNHc Note: nucleases Location: 69000-69144 bp Feature: gene Location: 69546-69707 bp Feature: gene Location: 69743-71683 bp Feature: domain Description: Bac_Flav_CT_G Location: 69746-71666 bp Feature: domain Description: Bac_Flav_CT_G Location: 697 46-7 1666 bp Feature: gene Location: 77187-77909 bp Feature: domain Description: YWFCY Location: 77193-77370 bp Feature: domain Description: YWFCY Location: 7 7 193-7 7 37 0 bp Feature: gene Location: 77982-78284 bp Feature: gene Location: 78504-79400 bp Feature: RT Description: RVT_N Location: 78576-78816 bp Feature: RT Description: RVT_N Location: 7 857 6-7 8816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78864-79374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 8864-7 937 4 bp Feature: gene Location: 79906-81162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80122-80779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80122-807 7 9 bp Feature: domain Description: GIIM Note: maturase Location: 80857-81088 bp Feature: domain Description: GIIM Note: maturase Location: 80857 -81088 bp Feature: gene Location: 81269-82057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81278-81389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8127 8-81389 bp Feature: domain Description: GIIM Note: maturase Location: 81440-81674 bp Feature: domain Description: GIIM Note: maturase Location: 81440-8167 4 bp Feature: gene Location: 82061-83467 bp Feature: domain Description: TraG-D_C Location: 82841-83174 bp Feature: domain Description: TraG-D_C Location: 82841-8317 4 bp Feature: gene Location: 83506-84762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), RVT_N (pfam13655), GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: QVMO01000052.1 Dysgonomonas sp. 521 scaffold52_size38006, whole genome shotgun sequence (38006 bp)
Overview 1 RT 1: 33870-38004 bp Neighborhood of RT #1 [33870, 38004] RVT_N RVT-GII YkfC Feature: gene Location: 33870-34337 bp Feature: gene Location: 34400-35662 bp Feature: gene Location: 35668-37335 bp Feature: RT Description: RVT_N Location: 35734-35977 bp Feature: RT Description: RVT_N Location: 35734-35977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36022-36670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36022-36670 bp Feature: domain Description: YkfC Location: 36808-37000 bp Feature: domain Description: YkfC Location: 368 08 -37000 bp Feature: gene Location: 37861-38004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: QVMO01000079.1 Dysgonomonas sp. 521 scaffold79_size19158, whole genome shotgun sequence (19158 bp)
Overview 1 RT 1: 255-6125 bp Neighborhood of RT #1 [255, 6589] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 Feature: gene Location: 255-590 bp Feature: domain Description: DUF4133 Location: 270-537 bp Feature: domain Description: DUF4133 Location: 270-537 bp Feature: gene Location: 583-2982 bp Feature: domain Description: Bac_Flav_CT_G Location: 586-2974 bp Feature: domain Description: Bac_Flav_CT_G Location: 586-29 74 bp Feature: gene Location: 3552-5375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3816-4638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3816-4638 bp Feature: domain Description: Intron_maturas2 Location: 4812-5046 bp Feature: domain Description: Intron_maturas2 Location: 4812-5046 bp Feature: domain Description: HNHc Note: nucleases Location: 5166-5337 bp Feature: domain Description: HNHc Note: nucleases Location: 5166-5337 bp Feature: gene Location: 5601-5915 bp Feature: domain Description: DUF3876 Location: 5634-5904 bp Feature: domain Description: DUF3876 Location: 5634-59 04 bp Feature: gene Location: 5969-6589 bp Feature: domain Description: DUF4141 Location: 5987-6125 bp Feature: domain Description: DUF4141 Location: 59 87-6125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783)