myRT

myRT report for GCA_010501075.1_ASM1050107v1

Download annotations/find similar RTs

Seq: QVMN01000014.1 Dysgonomonas sp. 25 scaffold14_size51583, whole genome shotgun sequence (51583 bp)
Overview 1 RT 1: 5952-9432 bp Neighborhood of RT #1 [5952, 9467] RVT-DGRs RteC HTH_17 Feature: gene Location: 5952-6107 bp Feature: gene Location: 6138-6353 bp Feature: gene Location: 6554-7744 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6776-7475 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6776-7475 bp Feature: gene Location: 7926-8765 bp Feature: domain Description: RteC Location: 8109-8751 bp Feature: domain Description: RteC Location: 81 09-8751 bp Feature: gene Location: 9174-9467 bp Feature: domain Description: HTH_17 Location: 9288-9432 bp Feature: domain Description: HTH_1 7 Location: 9288-9432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, RteC (pfam09357), HTH_17 (pfam12728)

Seq: QVMN01000021.1 Dysgonomonas sp. 25 scaffold22_size2123, whole genome shotgun sequence (2123 bp)
Overview 1 RT 1: 2-1740 bp Neighborhood of RT #1 [2, 1919] RVT-GII GIIM Feature: gene Location: 2-157 bp Feature: gene Location: 159-290 bp Feature: gene Location: 528-1919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 843-1470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 843-1470 bp Feature: domain Description: GIIM Note: maturase Location: 1524-1740 bp Feature: domain Description: GIIM Note: maturase Location: 152 4-1740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QVMN01000003.1 Dysgonomonas sp. 25 scaffold3_size454359, whole genome shotgun sequence (454359 bp)
Overview 1 RT 1: 127861-139654 bp Neighborhood of RT #1 [127861, 139654] CarbopepD_reg_2 Plug TonB_dep_Rec DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 127861-130827 bp Feature: domain Description: CarbopepD_reg_2 Location: 127936-128194 bp Feature: domain Description: CarbopepD_reg_2 Location: 12793 6-128194 bp Feature: domain Description: Plug Location: 128215-128554 bp Feature: domain Description: Plug Location: 128215-128554 bp Feature: domain Description: TonB_dep_Rec Location: 128737-130819 bp Feature: domain Description: TonB_dep_Rec Location: 12873 7-13 0819 bp Feature: gene Location: 131038-136845 bp Feature: domain Description: DUF4011 Location: 132184-132697 bp Feature: domain Description: DUF4011 Location: 13 2184-13 2697 bp Feature: domain Description: DEXXQc_SF1 Location: 133036-133549 bp Feature: domain Description: DEXXQc_SF1 Location: 13 3 03 6-13 3 549 bp Feature: domain Description: DEXXQc_SF1 Location: 134479-135235 bp Feature: domain Description: DEXXQc_SF1 Location: 13 4479-13 523 5 bp Feature: domain Description: KOG1803 Location: 135358-135748 bp Feature: domain Description: KOG1803 Location: 13 53 58-13 5748 bp Feature: domain Description: MTES_1575 Location: 135904-136189 bp Feature: domain Description: MTES_1575 Location: 13 5904-13 6189 bp Feature: domain Description: DUF3320 Location: 136363-136495 bp Feature: domain Description: DUF3 3 20 Location: 13 63 63 -13 6495 bp Feature: gene Location: 136852-138015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 137209-137755 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 7209-13 7755 bp Feature: gene Location: 138353-139054 bp Feature: gene Location: 139220-139654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CarbopepD_reg_2 (pfam13715), Plug (pfam07715), TonB_dep_Rec (pfam00593), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons