myRT

myRT report for GCA_010548215.1_ASM1054821v1

Download annotations/find similar RTs

Seq: JAAGLM010000871.1 Streptomyces sp. SID10815 contig-1000018, whole genome shotgun sequence (9663 bp)
Overview 1 RT 1: 7488-9494 bp Neighborhood of RT #1 [7488, 9661] ZnMc_serralysin_like RVT-GII GIIM Feature: gene Location: 7488-7997 bp Feature: gene Location: 8228-8992 bp Feature: domain Description: ZnMc_serralysin_like Location: 8594-8795 bp Feature: domain Description: ZnMc_serralysin_like Location: 8594-8795 bp Feature: gene Location: 9077-9661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9083-9209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9083-9209 bp Feature: domain Description: GIIM Note: maturase Location: 9266-9494 bp Feature: domain Description: GIIM Note: maturase Location: 9266-9494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZnMc_serralysin_like (cd04277), RVT-GII, GIIM (pfam08388)

Seq: JAAGLM010000908.1 Streptomyces sp. SID10815 contig-38000018, whole genome shotgun sequence (14894 bp)
Overview 1 RT 1: 3-2578 bp Neighborhood of RT #1 [3, 2589] RVT-GII GIIM DUF2797 OmpR Feature: gene Location: 3-587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-135 bp Feature: domain Description: GIIM Note: maturase Location: 192-420 bp Feature: domain Description: GIIM Note: maturase Location: 192 -42 0 bp Feature: gene Location: 371-1582 bp Feature: domain Description: DUF2797 Location: 782-1493 bp Feature: domain Description: DUF2 797 Location: 782 -1493 bp Feature: gene Location: 1849-2589 bp Feature: domain Description: OmpR Location: 1912-2578 bp Feature: domain Description: OmpR Location: 1912 -2 578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), RVT-GII, GIIM (pfam08388), DUF2797 (pfam10977)

Seq: JAAGLM010001767.1 Streptomyces sp. SID10815 contig-38000035, whole genome shotgun sequence (9322 bp)
Overview 1 RT 1: 3-9031 bp Neighborhood of RT #1 [3, 9198] HAMP HAMP HAMP HAMP HAMP HAMP HAMP HAMP HAMP HAMP HAMP GAF_2 PRK11107 HATPase_RsbW-like sensory_box GAF_2 GAF_2 SpoIIE RVT-GII GIIM Feature: gene Location: 3-5150 bp Feature: domain Description: HAMP Location: 417-585 bp Feature: domain Description: HAMP Location: 417-585 bp Feature: domain Description: HAMP Location: 645-867 bp Feature: domain Description: HAMP Location: 645-867 bp Feature: domain Description: HAMP Location: 966-1152 bp Feature: domain Description: HAMP Location: 966-1152 bp Feature: domain Description: HAMP Location: 1197-1416 bp Feature: domain Description: HAMP Location: 1197-1416 bp Feature: domain Description: HAMP Location: 1473-1704 bp Feature: domain Description: HAMP Location: 1473 -1704 bp Feature: domain Description: HAMP Location: 1749-1980 bp Feature: domain Description: HAMP Location: 1749-1980 bp Feature: domain Description: HAMP Location: 2025-2253 bp Feature: domain Description: HAMP Location: 2025-2253 bp Feature: domain Description: HAMP Location: 2301-2532 bp Feature: domain Description: HAMP Location: 23 01-253 2 bp Feature: domain Description: HAMP Location: 2577-2805 bp Feature: domain Description: HAMP Location: 2577-2805 bp Feature: domain Description: HAMP Location: 2853-3084 bp Feature: domain Description: HAMP Location: 2853 -3 084 bp Feature: domain Description: HAMP Location: 3132-3345 bp Feature: domain Description: HAMP Location: 3 13 2-3 3 45 bp Feature: domain Description: GAF_2 Location: 3426-3858 bp Feature: domain Description: GAF_2 Location: 3 426-3 858 bp Feature: domain Description: PRK11107 Location: 4110-4950 bp Feature: domain Description: PRK11107 Location: 4110-4950 bp Feature: gene Location: 5520-8276 bp Feature: domain Description: HATPase_RsbW-like Location: 5775-6030 bp Feature: domain Description: HATPase_RsbW-like Location: 5775-603 0 bp Feature: domain Description: sensory_box Location: 6120-6417 bp Feature: domain Description: sensory_box Location: 6120-6417 bp Feature: domain Description: GAF_2 Location: 6537-6942 bp Feature: domain Description: GAF_2 Location: 653 7-6942 bp Feature: domain Description: GAF_2 Location: 7167-7512 bp Feature: domain Description: GAF_2 Location: 7167-7512 bp Feature: domain Description: SpoIIE Location: 7683-8253 bp Feature: domain Description: SpoIIE Location: 7683 -8253 bp Feature: gene Location: 8383-9198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8386-8746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 86-8746 bp Feature: domain Description: GIIM Note: maturase Location: 8803-9031 bp Feature: domain Description: GIIM Note: maturase Location: 8803 -903 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAMP (smart00304), GAF_2 (pfam13185), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), HATPase_RsbW-like (cd16936), sensory_box (TIGR00229), SpoIIE (pfam07228), RVT-GII, GIIM (pfam08388)

Seq: JAAGLM010001059.1 Streptomyces sp. SID10815 contig-59000021, whole genome shotgun sequence (5520 bp)
Overview 1 RT 1: 2-4221 bp Neighborhood of RT #1 [2, 4235] RVT-GII GIIM PRK12268 vWA-TerF-like Feature: gene Location: 2-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-4 88 bp Feature: domain Description: GIIM Note: maturase Location: 545-773 bp Feature: domain Description: GIIM Note: maturase Location: 54 5-773 bp Feature: gene Location: 1039-2754 bp Feature: domain Description: PRK12268 Location: 1042-2743 bp Feature: domain Description: PRK12268 Location: 104 2-274 3 bp Feature: gene Location: 2916-4235 bp Feature: domain Description: vWA-TerF-like Location: 3681-4221 bp Feature: domain Description: vWA-TerF-like Location: 3681-4 221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12268 (methionyl-tRNA synthetase; Reviewed), vWA-TerF-like (pfam10138), RVT-GII, GIIM (pfam08388)