myRT

myRT report for GCA_010550425.1_ASM1055042v1

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Seq: JAAGNC010000060.1 Amycolatopsis rubida strain SID8386 contig-12, whole genome shotgun sequence (46068 bp)
Overview 1 RT 1: 40161-45277 bp Neighborhood of RT #1 [40161, 45277] IS285 RVT-GII GIIM IS285 Feature: gene Location: 40161-40529 bp Feature: gene Location: 40777-41244 bp Feature: domain Description: IS285 Location: 40894-41221 bp Feature: domain Description: IS285 Location: 40894-41 221 bp Feature: gene Location: 41810-43273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42149-42845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421 49-42845 bp Feature: domain Description: GIIM Note: maturase Location: 42920-43130 bp Feature: domain Description: GIIM Note: maturase Location: 42920-431 30 bp Feature: gene Location: 43302-44531 bp Feature: domain Description: IS285 Location: 43389-44049 bp Feature: domain Description: IS285 Location: 43389-44049 bp Feature: gene Location: 45116-45277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388)

Seq: JAAGNC010000068.1 Amycolatopsis rubida strain SID8386 contig-14, whole genome shotgun sequence (202609 bp)
Overview 1 RT 1: 102332-105637 bp Neighborhood of RT #1 [102332, 105798] RVT-Retrons HTH_MARR Feature: gene Location: 102332-102526 bp Feature: gene Location: 103524-103979 bp Feature: gene Location: 103991-105043 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 104192-104807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 104192 -104807 bp Feature: gene Location: 105067-105225 bp Feature: gene Location: 105274-105798 bp Feature: domain Description: HTH_MARR Location: 105361-105637 bp Feature: domain Description: HTH_MARR Location: 105361-105637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_MARR (smart00347)

Seq: JAAGNC010000075.1 Amycolatopsis rubida strain SID8386 contig-2000015, whole genome shotgun sequence (68082 bp)
Overview 1 RT 1: 11174-15081 bp Neighborhood of RT #1 [11174, 15081] DUF1524 DUF262 RVT-GII GIIM DNase_NucA_NucB Feature: gene Location: 11174-12223 bp Feature: domain Description: DUF1524 Location: 11732-12185 bp Feature: domain Description: DUF1524 Location: 1173 2-12185 bp Feature: gene Location: 12307-12927 bp Feature: domain Description: DUF262 Location: 12340-12793 bp Feature: domain Description: DUF262 Location: 123 40-12793 bp Feature: gene Location: 12974-13693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12977-13262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12977-13 262 bp Feature: domain Description: GIIM Note: maturase Location: 13337-13562 bp Feature: domain Description: GIIM Note: maturase Location: 13 3 3 7-13 562 bp Feature: gene Location: 13816-13950 bp Feature: domain Description: DNase_NucA_NucB Location: 13822-13939 bp Feature: domain Description: DNase_NucA_NucB Location: 13 822-13 93 9 bp Feature: gene Location: 14038-15081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1524 (pfam07510), DUF262 (pfam03235), RVT-GII, GIIM (pfam08388), DNase_NucA_NucB (pfam14040)