myRT

myRT report for GCA_010590525.1_ASM1059052v1

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Seq: VKTD01000014.1 Escherichia coli strain AS012455 AS012455_14, whole genome shotgun sequence (104598 bp)
Overview 1 RT 1: 3-2034 bp Neighborhood of RT #1 [3, 2051] CbeA_antitoxin RVT-GII GIIM CbeA_antitoxin Feature: gene Location: 3-161 bp Feature: domain Description: CbeA_antitoxin Location: 6-114 bp Feature: domain Description: CbeA_antitoxin Location: 6-1 1 4 bp Feature: gene Location: 198-1439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-1 062 bp Feature: domain Description: GIIM Note: maturase Location: 1143-1365 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 43-1 365 bp Feature: gene Location: 1466-1816 bp Feature: gene Location: 1857-2051 bp Feature: domain Description: CbeA_antitoxin Location: 1977-2034 bp Feature: domain Description: CbeA_antitoxin Location: 1 977-2034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CbeA_antitoxin (pfam06154), RVT-GII, GIIM (pfam08388)

Seq: VKTD01000015.1 Escherichia coli strain AS012455 AS012455_15, whole genome shotgun sequence (101889 bp)
Overview 1 RT 1: 8-2841 bp Neighborhood of RT #1 [8, 2841] RVT-AbiP2 HTH_29 HTH_33 DDE_3 Feature: gene Location: 8-1378 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 269-725 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 69-72 5 bp Feature: gene Location: 1480-2517 bp Feature: domain Description: HTH_29 Location: 1576-1747 bp Feature: domain Description: HTH_2 9 Location: 1576-1747 bp Feature: domain Description: HTH_33 Location: 1780-1942 bp Feature: domain Description: HTH_33 Location: 1780-1942 bp Feature: domain Description: DDE_3 Location: 1984-2413 bp Feature: domain Description: DDE_3 Location: 1984-2 413 bp Feature: gene Location: 2551-2841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: VKTD01000028.1 Escherichia coli strain AS012455 AS012455_28, whole genome shotgun sequence (54814 bp)
Overview 1 RT 1: 53275-54811 bp Neighborhood of RT #1 [53275, 54811] PRK10173 PRK10173 RVT-GII Feature: gene Location: 53275-53724 bp Feature: domain Description: PRK10173 Location: 53278-53716 bp Feature: domain Description: PRK10173 Location: 53 278-53 716 bp Feature: gene Location: 53708-54019 bp Feature: domain Description: PRK10173 Location: 53711-53930 bp Feature: domain Description: PRK10173 Location: 53 711-53 93 0 bp Feature: gene Location: 54058-54561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54331-54400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543 3 1-54400 bp Feature: gene Location: 54515-54811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: VKTD01000074.1 Escherichia coli strain AS012455 AS012455_74, whole genome shotgun sequence (4156 bp)
Overview 1 RT 1: 378-2666 bp Neighborhood of RT #1 [378, 2725] PHA02517 InsE RVT-GII trans_reg_C Feature: gene Location: 378-875 bp Feature: domain Description: PHA02517 Location: 540-873 bp Feature: domain Description: PHA02517 Location: 54 0-873 bp Feature: gene Location: 921-1130 bp Feature: domain Description: InsE Location: 933-1107 bp Feature: domain Description: InsE Location: 933-1107 bp Feature: gene Location: 1157-1612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1448-1538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 4 8-1538 bp Feature: gene Location: 1784-2125 bp Feature: gene Location: 2423-2725 bp Feature: domain Description: trans_reg_C Location: 2471-2666 bp Feature: domain Description: trans_reg_C Location: 24 71-2666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, trans_reg_C (cd00383)

Seq: VKTD01000075.1 Escherichia coli strain AS012455 AS012455_75, whole genome shotgun sequence (4060 bp)
Overview 1 RT 1: 2-2069 bp Neighborhood of RT #1 [2, 2107] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 2-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 -683 bp Feature: domain Description: GIIM Note: maturase Location: 758-956 bp Feature: domain Description: GIIM Note: maturase Location: 75 8-95 6 bp Feature: gene Location: 1318-1674 bp Feature: domain Description: PHA02517 Location: 1321-1630 bp Feature: domain Description: PHA025 17 Location: 1321-1630 bp Feature: gene Location: 1703-2107 bp Feature: domain Description: InsE Location: 1733-2069 bp Feature: domain Description: InsE Location: 1733-2069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)