myRT

myRT report for GCA_010591195.1_ASM1059119v1

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Seq: VKUH01000013.1 Escherichia coli strain AS012419 AS012419_13, whole genome shotgun sequence (101613 bp)
Overview 1 RT 1: 98773-100953 bp Neighborhood of RT #1 [98773, 101606] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 98773-99063 bp Feature: gene Location: 99073-100134 bp Feature: domain Description: HTH_29 Location: 99193-99364 bp Feature: domain Description: HTH_29 Location: 991 93-99364 bp Feature: domain Description: HTH_33 Location: 99397-99559 bp Feature: domain Description: HTH_33 Location: 99397-99559 bp Feature: domain Description: DDE_3 Location: 99601-100030 bp Feature: domain Description: DDE_3 Location: 99601 -1 00030 bp Feature: gene Location: 100236-101606 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 100497-100953 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 00497-1 00953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: VKUH01000019.1 Escherichia coli strain AS012419 AS012419_19, whole genome shotgun sequence (92784 bp)
Overview 1 RT 1: 58688-62920 bp Neighborhood of RT #1 [58688, 62920] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 58688-58921 bp Feature: domain Description: DUF905 Location: 58718-58916 bp Feature: domain Description: DUF905 Location: 58718-58916 bp Feature: gene Location: 58978-59418 bp Feature: domain Description: PRK13732 Location: 58984-59416 bp Feature: domain Description: PRK13732 Location: 58984-59416 bp Feature: gene Location: 59613-61514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59880-60711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59880-60711 bp Feature: domain Description: Intron_maturas2 Location: 60825-61083 bp Feature: domain Description: Intron_maturas2 Location: 6082 5-61083 bp Feature: domain Description: HNHc Note: nucleases Location: 61257-61419 bp Feature: domain Description: HNHc Note: nucleases Location: 612 57-61419 bp Feature: gene Location: 62231-62467 bp Feature: gene Location: 62468-62920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VKUH01000070.1 Escherichia coli strain AS012419 AS012419_70, whole genome shotgun sequence (4089 bp)
Overview 1 RT 1: 1-2098 bp Neighborhood of RT #1 [1, 2136] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-712 bp Feature: domain Description: GIIM Note: maturase Location: 787-985 bp Feature: domain Description: GIIM Note: maturase Location: 787-985 bp Feature: gene Location: 1347-1703 bp Feature: domain Description: PHA02517 Location: 1350-1659 bp Feature: domain Description: PHA02517 Location: 13 50-1659 bp Feature: gene Location: 1732-2136 bp Feature: domain Description: InsE Location: 1762-2098 bp Feature: domain Description: InsE Location: 1762-2098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: VKUH01000078.1 Escherichia coli strain AS012419 AS012419_78, whole genome shotgun sequence (1102 bp)
Overview 1 RT 1: 3-1101 bp Neighborhood of RT #1 [3, 1100] PHA02517 RVT-GII Feature: gene Location: 3-182 bp Feature: domain Description: PHA02517 Location: 6-117 bp Feature: domain Description: PHA02517 Location: 6-117 bp Feature: gene Location: 774-1100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047-1101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 7-1101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII