myRT

myRT report for GCA_010598085.1_ASM1059808v1

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Seq: VKXN01000018.1 Klebsiella pneumoniae strain AS012307 AS012307_18, whole genome shotgun sequence (114993 bp)
Overview 1 RT 1: 107460-114328 bp Neighborhood of RT #1 [107460, 114330] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 107460-108188 bp Feature: domain Description: FimC Location: 107508-108171 bp Feature: domain Description: FimC Location: 1 07508-1 081 71 bp Feature: gene Location: 108220-110829 bp Feature: domain Description: FimD Location: 108277-110818 bp Feature: domain Description: FimD Location: 1 08277-1 1 081 8 bp Feature: gene Location: 110829-112907 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 111237-111681 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 1 237-1 1 1 681 bp Feature: gene Location: 112964-113404 bp Feature: domain Description: Integrase_1 Location: 112970-113186 bp Feature: domain Description: Integrase_1 Location: 1 1 2970-1 1 31 86 bp Feature: gene Location: 113665-114330 bp Feature: domain Description: INT_P4_C Location: 113770-114328 bp Feature: domain Description: INT_P4_C Location: 1 1 3770-1 1 4328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: VKXN01000055.1 Klebsiella pneumoniae strain AS012307 AS012307_55, whole genome shotgun sequence (12659 bp)
Overview 1 RT 1: 4026-7363 bp Neighborhood of RT #1 [4026, 7428] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 4026-4265 bp Feature: gene Location: 4328-4783 bp Feature: domain Description: PHA02517 Location: 4337-4757 bp Feature: domain Description: PHA02 517 Location: 4337-4757 bp Feature: gene Location: 4879-6402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5152-5884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5152 -5884 bp Feature: domain Description: GIIM Note: maturase Location: 5959-6157 bp Feature: domain Description: GIIM Note: maturase Location: 5959-6157 bp Feature: gene Location: 6356-6781 bp Feature: gene Location: 6994-7428 bp Feature: domain Description: PHA02517 Location: 7096-7363 bp Feature: domain Description: PHA02 517 Location: 7096-7363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VKXN01000074.1 Klebsiella pneumoniae strain AS012307 AS012307_74, whole genome shotgun sequence (1917 bp)
Overview 1 RT 1: 3-1464 bp Neighborhood of RT #1 [3, 1856] RVT-GII Feature: gene Location: 3-215 bp Feature: gene Location: 369-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII