myRT

myRT report for GCA_010598315.1_ASM1059831v1

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Seq: VKXZ01000116.1 Escherichia coli strain AS012287 AS012287_116, whole genome shotgun sequence (14520 bp)
Overview 1 RT 1: 187-2494 bp 2 RT 2: 12111-14459 bp Neighborhood of RT #1 [187, 2511] RVT-GII PRK10276 Neighborhood of RT #2 [12111, 14512] InsE PHA02517 RVT-GII Feature: gene Location: 187-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 93-805 bp Feature: gene Location: 1309-1674 bp Feature: gene Location: 1699-2511 bp Feature: domain Description: PRK10276 Location: 2131-2494 bp Feature: domain Description: PRK1 0276 Location: 21 31 -2494 bp Feature: gene Location: 12111-12395 bp Feature: domain Description: InsE Location: 12123-12384 bp Feature: domain Description: InsE Location: 1 21 23-1 2384 bp Feature: gene Location: 12443-12862 bp Feature: domain Description: PHA02517 Location: 12458-12797 bp Feature: domain Description: PHA0251 7 Location: 1 2458-1 2797 bp Feature: gene Location: 13454-14512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13727-14459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3727-1 4459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: VKXZ01000359.1 Escherichia coli strain AS012287 AS012287_359, whole genome shotgun sequence (596 bp)
Overview 1 RT 1: 1-589 bp Neighborhood of RT #1 [1, 594] RVT-GII RVT-GII Feature: gene Location: 1-303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94-172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94-172 bp Feature: gene Location: 331-594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VKXZ01000040.1 Escherichia coli strain AS012287 AS012287_40, whole genome shotgun sequence (40758 bp)
Overview 1 RT 1: 27255-31137 bp Neighborhood of RT #1 [27255, 31142] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 27255-27971 bp Feature: domain Description: rph Location: 27258-27966 bp Feature: domain Description: rph Location: 27258-27966 bp Feature: gene Location: 28022-28678 bp Feature: domain Description: pyrE Location: 28040-28673 bp Feature: domain Description: pyrE Location: 28040-28673 bp Feature: gene Location: 28976-29935 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29111-29660 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29111-29660 bp Feature: gene Location: 29981-30577 bp Feature: domain Description: slmA Location: 29987-30563 bp Feature: domain Description: slmA Location: 29987-3 0563 bp Feature: gene Location: 30684-31142 bp Feature: domain Description: dut Location: 30690-31137 bp Feature: domain Description: dut Location: 3 0690-3 113 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)