myRT

myRT report for GCA_010614825.1_ASM1061482v1

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Seq: JAAFZF010000001.1 Bacillus sp. FJAT-2464 Scaffold1, whole genome shotgun sequence (268561 bp)
Overview 1 RT 1: 265362-268371 bp Neighborhood of RT #1 [265362, 268559] GT4_PimA-like COG2112 RVT-GII GIIM Feature: gene Location: 265362-266507 bp Feature: domain Description: GT4_PimA-like Location: 265374-266424 bp Feature: domain Description: GT4_PimA-like Location: 265374-266424 bp Feature: gene Location: 266558-267535 bp Feature: domain Description: COG2112 Location: 266591-267002 bp Feature: domain Description: COG21 1 2 Location: 266591 -267002 bp Feature: gene Location: 267816-268559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267822-268116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267822-2681 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 268164-268371 bp Feature: domain Description: GIIM Note: maturase Location: 2681 64-268371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT4_PimA-like (cd03801), COG2112 (Predicted Ser/Thr protein kinase ), RVT-GII, GIIM (pfam08388)

Seq: JAAFZF010000104.1 Bacillus sp. FJAT-2464 Scaffold104, whole genome shotgun sequence (819 bp)
Overview 1 RT 1: 1-664 bp Neighborhood of RT #1 [1, 816] RVT-GII GIIM Feature: gene Location: 1-816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-400 bp Feature: domain Description: GIIM Note: maturase Location: 448-664 bp Feature: domain Description: GIIM Note: maturase Location: 448-664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAFZF010000016.1 Bacillus sp. FJAT-2464 Scaffold16, whole genome shotgun sequence (58265 bp)
Overview 1 RT 1: 56914-58245 bp Neighborhood of RT #1 [56914, 58262] spore_YhcN_YlaJ RVT-GII Feature: gene Location: 56914-57504 bp Feature: domain Description: spore_YhcN_YlaJ Location: 56941-57376 bp Feature: domain Description: spore_YhcN_YlaJ Location: 56941-573 76 bp Feature: gene Location: 57840-57986 bp Feature: gene Location: 58125-58262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58128-58245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58128-58245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spore_YhcN_YlaJ (TIGR02898), RVT-GII

Seq: JAAFZF010000022.1 Bacillus sp. FJAT-2464 Scaffold22, whole genome shotgun sequence (47812 bp)
Overview 1 RT 1: 15429-22052 bp Neighborhood of RT #1 [15429, 22093] PRK06545 PRK14806 RVT-GII RVT-GII GIIM TPR TPR TPR TPR Feature: gene Location: 15429-16535 bp Feature: domain Description: PRK06545 Location: 15441-16518 bp Feature: domain Description: PRK0654 5 Location: 154 4 1-16518 bp Feature: gene Location: 16562-17848 bp Feature: domain Description: PRK14806 Location: 16595-17828 bp Feature: domain Description: PRK14 806 Location: 16595-17828 bp Feature: gene Location: 18399-18959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18705-18951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18705-18951 bp Feature: gene Location: 18959-19702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18962-19340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18962-1934 0 bp Feature: domain Description: GIIM Note: maturase Location: 19421-19649 bp Feature: domain Description: GIIM Note: maturase Location: 194 21-1964 9 bp Feature: gene Location: 19899-20798 bp Feature: gene Location: 20828-22093 bp Feature: domain Description: TPR Location: 20861-21101 bp Feature: domain Description: TPR Location: 20861-21101 bp Feature: domain Description: TPR Location: 21137-21419 bp Feature: domain Description: TPR Location: 21137-214 19 bp Feature: domain Description: TPR Location: 21446-21716 bp Feature: domain Description: TPR Location: 214 4 6-21716 bp Feature: domain Description: TPR Location: 21854-22052 bp Feature: domain Description: TPR Location: 21854 -22052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06545 (prephenate dehydrogenase; Validated), PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional), RVT-GII, GIIM (pfam08388), TPR (smart00028)

Seq: JAAFZF010000028.1 Bacillus sp. FJAT-2464 Scaffold28, whole genome shotgun sequence (40485 bp)
Overview 1 RT 1: 1-3744 bp Neighborhood of RT #1 [1, 3749] RVT-GII pgi YqdH Feature: gene Location: 1-267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199-268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199-268 bp Feature: gene Location: 1072-2421 bp Feature: domain Description: pgi Location: 1075-2416 bp Feature: domain Description: pgi Location: 1075 -2416 bp Feature: gene Location: 2586-3749 bp Feature: domain Description: YqdH Location: 2589-3744 bp Feature: domain Description: YqdH Location: 25 89-3744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, pgi (PRK14097), YqdH (COG1979)

Seq: JAAFZF010000033.1 Bacillus sp. FJAT-2464 Scaffold33, whole genome shotgun sequence (35162 bp)
Overview 1 RT 1: 3-1969 bp Neighborhood of RT #1 [3, 1971] RVT-GII PRK08582 Feature: gene Location: 3-401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-396 bp Feature: gene Location: 646-945 bp Feature: gene Location: 1549-1971 bp Feature: domain Description: PRK08582 Location: 1552-1969 bp Feature: domain Description: PRK08582 Location: 1552-196 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK08582 (RNA-binding protein S1)

Seq: JAAFZF010000048.1 Bacillus sp. FJAT-2464 Scaffold48, whole genome shotgun sequence (20443 bp)
Overview 1 RT 1: 16975-20258 bp Neighborhood of RT #1 [16975, 20440] spore_II_E RVT-GII GIIM Feature: gene Location: 16975-19464 bp Feature: domain Description: spore_II_E Location: 17128-19405 bp Feature: domain Description: spore_II_E Location: 17 128-19405 bp Feature: gene Location: 19524-19658 bp Feature: gene Location: 19784-20440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19790-19994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197 90-19994 bp Feature: domain Description: GIIM Note: maturase Location: 20045-20258 bp Feature: domain Description: GIIM Note: maturase Location: 20045-20258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spore_II_E (TIGR02865), RVT-GII, GIIM (pfam08388)

Seq: JAAFZF010000060.1 Bacillus sp. FJAT-2464 Scaffold60, whole genome shotgun sequence (14555 bp)
Overview 1 RT 1: 1-2497 bp Neighborhood of RT #1 [1, 2505] RVT-GII GIIM DUF2975 YugN Feature: gene Location: 1-768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-325 bp Feature: domain Description: GIIM Note: maturase Location: 373-586 bp Feature: domain Description: GIIM Note: maturase Location: 373-58 6 bp Feature: gene Location: 915-1397 bp Feature: domain Description: DUF2975 Location: 1044-1356 bp Feature: domain Description: DUF2975 Location: 1044-1356 bp Feature: gene Location: 2104-2505 bp Feature: domain Description: YugN Location: 2113-2497 bp Feature: domain Description: YugN Location: 2113-2497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF2975 (pfam11188), YugN (pfam08868)

Seq: JAAFZF010000066.1 Bacillus sp. FJAT-2464 Scaffold66, whole genome shotgun sequence (12641 bp)
Overview 1 RT 1: 10902-12553 bp Neighborhood of RT #1 [10902, 12603] YjcZ_2 RVT-GII Feature: gene Location: 10902-11045 bp Feature: domain Description: YjcZ_2 Location: 10971-11028 bp Feature: domain Description: YjcZ_2 Location: 109 71-11028 bp Feature: gene Location: 11876-12214 bp Feature: gene Location: 12211-12603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12289-12553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12289 -12553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjcZ_2, RVT-GII

Seq: JAAFZF010000071.1 Bacillus sp. FJAT-2464 Scaffold71, whole genome shotgun sequence (9732 bp)
Overview 1 RT 1: 2-3587 bp Neighborhood of RT #1 [2, 3592] RVT-GII SrmB MurF Feature: gene Location: 2-202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-203 bp Feature: gene Location: 446-1921 bp Feature: domain Description: SrmB Location: 455-1907 bp Feature: domain Description: SrmB Location: 455-1907 bp Feature: gene Location: 2216-3592 bp Feature: domain Description: MurF Location: 2225-3587 bp Feature: domain Description: MurF Location: 2225-3587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SrmB (COG0513), MurF (COG0770)

Seq: JAAFZF010000072.1 Bacillus sp. FJAT-2464 Scaffold72, whole genome shotgun sequence (9529 bp)
Overview 1 RT 1: 8031-9470 bp Neighborhood of RT #1 [8031, 9526] OmpR GIIM RVT-GII Feature: gene Location: 8031-8747 bp Feature: domain Description: OmpR Location: 8043-8733 bp Feature: domain Description: OmpR Location: 8043-8733 bp Feature: gene Location: 8969-9268 bp Feature: domain Description: GIIM Note: maturase Location: 8972-9134 bp Feature: domain Description: GIIM Note: maturase Location: 8972-9134 bp Feature: gene Location: 9314-9526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9317-9470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9317-9470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), GIIM (pfam08388), RVT-GII

Seq: JAAFZF010000082.1 Bacillus sp. FJAT-2464 Scaffold82, whole genome shotgun sequence (5277 bp)
Overview 1 RT 1: 2904-5240 bp Neighborhood of RT #1 [2904, 5275] BaeS GIIM RVT-GII Feature: gene Location: 2904-4184 bp Feature: domain Description: BaeS Location: 3294-4140 bp Feature: domain Description: BaeS Location: 3294-4140 bp Feature: gene Location: 4236-4688 bp Feature: domain Description: GIIM Note: maturase Location: 4293-4509 bp Feature: domain Description: GIIM Note: maturase Location: 4293-4509 bp Feature: gene Location: 4928-5275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4931-5240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4931-5240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), GIIM (pfam08388), RVT-GII

Seq: JAAFZF010000089.1 Bacillus sp. FJAT-2464 Scaffold89, whole genome shotgun sequence (4071 bp)
Overview 1 RT 1: 1266-3886 bp Neighborhood of RT #1 [1266, 4068] YneR DUF445 RVT-GII GIIM Feature: gene Location: 1266-1697 bp Feature: domain Description: YneR Location: 1398-1677 bp Feature: domain Description: YneR Location: 13 98-1677 bp Feature: gene Location: 1859-3118 bp Feature: domain Description: DUF445 Location: 1991-3110 bp Feature: domain Description: DUF445 Location: 1991-3110 bp Feature: gene Location: 3193-4068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3196-3622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3196-3622 bp Feature: domain Description: GIIM Note: maturase Location: 3670-3886 bp Feature: domain Description: GIIM Note: maturase Location: 3670-3886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YneR (COG4841), DUF445 (pfam04286), RVT-GII, GIIM (pfam08388)