myRT

myRT report for GCA_010634845.1_ASM1063484v1

Download annotations/find similar RTs

Seq: JXDI01000001.1 Pseudomonas antarctica strain CMS 35 PSAN_contig000001, whole genome shotgun sequence (4226903 bp)
Overview 1 RT 1: 2125752-2134187 bp Neighborhood of RT #1 [2125752, 2134252] Peptidase_C14 RVT-UG1 INT_Rci_Hp1_C Feature: gene Location: 2125752-2126375 bp Feature: gene Location: 2126992-2127312 bp Feature: domain Description: Peptidase_C14 Location: 2127001-2127265 bp Feature: domain Description: Peptidase_C1 4 Location: 21 27001 -21 27265 bp Feature: gene Location: 2128721-2132572 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2129384-2129930 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 21 29384-21 29930 bp Feature: gene Location: 2132843-2133064 bp Feature: gene Location: 2133179-2134252 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2133686-2134187 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 21 33686-21 341 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C14 (pfam00656), RVT-UG1, INT_Rci_Hp1_C (cd00796)

Seq: JXDI01000003.1 Pseudomonas antarctica strain CMS 35 PSAN_contig000003, whole genome shotgun sequence (571354 bp)
Overview 1 RT 1: 333844-338323 bp Neighborhood of RT #1 [333844, 338376] Avd_like RVT-DGRs Asp_Ala_antiprt Glu-decarb-GAD Feature: gene Location: 333844-334155 bp Feature: gene Location: 334152-334508 bp Feature: domain Description: Avd_like Location: 334179-334482 bp Feature: domain Description: Avd_like Location: 334179-334482 bp Feature: gene Location: 334754-335839 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 335015-335630 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 335015-335630 bp Feature: gene Location: 335931-336962 bp Feature: domain Description: Asp_Ala_antiprt Location: 336114-336915 bp Feature: domain Description: Asp_Ala_antiprt Location: 336114-336915 bp Feature: gene Location: 336955-338376 bp Feature: domain Description: Glu-decarb-GAD Location: 337048-338323 bp Feature: domain Description: Glu-decarb-GAD Location: 337048-33832 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, Asp_Ala_antiprt (TIGR03802), Glu-decarb-GAD (TIGR01788)

Seq: JXDI01000004.1 Pseudomonas antarctica strain CMS 35 PSAN_contig000004, whole genome shotgun sequence (498498 bp)
Overview 1 RT 1: 9536-20519 bp Neighborhood of RT #1 [9536, 20548] autotrans_barl PinE RVT-GII DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 9536-13525 bp Feature: domain Description: autotrans_barl Location: 12170-13523 bp Feature: domain Description: autotrans_barl Location: 12170-13 523 bp Feature: gene Location: 13689-14261 bp Feature: domain Description: PinE Location: 13692-14232 bp Feature: domain Description: PinE Location: 13 692-1423 2 bp Feature: gene Location: 14634-15569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14748-15252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14748-15252 bp Feature: gene Location: 15568-16086 bp Feature: gene Location: 16099-16716 bp Feature: gene Location: 16772-16915 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 16778-16889 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 16778-16889 bp Feature: gene Location: 17037-18266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17238-17889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1723 8-17889 bp Feature: domain Description: GIIM Note: maturase Location: 17967-18171 bp Feature: domain Description: GIIM Note: maturase Location: 17967-18171 bp Feature: gene Location: 18730-20151 bp Feature: domain Description: LZ_Tnp_IS66 Location: 18877-19087 bp Feature: domain Description: LZ_Tnp_IS66 Location: 18877-19087 bp Feature: domain Description: zf-IS66 Location: 19117-19243 bp Feature: domain Description: zf-IS66 Location: 19117-19243 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19285-20110 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19285-20110 bp Feature: gene Location: 20213-20548 bp Feature: domain Description: TnpB_IS66 Location: 20231-20519 bp Feature: domain Description: TnpB_IS66 Location: 2023 1-20519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PinE (COG1961), RVT-GII, DDE_Tnp_IS66_C (pfam13817), GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)